Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq562919 87.8 4e-12 seq118106 86.0 1e-11 >seq562919 Length=404 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACG----ATTTGGCGGA 101910 |||||||| | | |||||| | | ||||| |||||| | | |||||| | | Sbjct 70 AAGAAGAAAGCTGATTGGGCTCTACAGTGGATCGCAAGCAAGACTGCAACATTTGGTGAA 129 Query 101911 ACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA--TTCGCATCC 101968 | ||||||||||||||| || || |||||||| | ||| | | ||| || || ||| Sbjct 130 AG-AATTGTTGCCTTTGCAGCTGTAGAAGGAATAT--TTTTCTCGGGCAGTTTTGCTTCC 186 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || |||||| | || || |||||| || |||| || ||||| | | |||||| | ||| Sbjct 187 ATCTTCTGGCTGAAAAAGAGGGGTCTTATGCCAGGACTCACATTCAGTAATGAGCTTATT 246 Query 102029 TCTAGGGACGA 102039 || ||||| || Sbjct 247 TCCAGGGATGA 257 >seq118106 Length=1339 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||||| || ||||| ||| | || ||||||||| || || ||| | ||| Sbjct 544 AATCCAGCAGACAGAAGAATGTTAATATGTGCATGGAATTCTTCAGACCTTAAGAAAATG 603 Query 35582 GCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTG 35640 || || || ||||| ||| || | || ||||||||||||||| |||| |||| || || Sbjct 604 GCGCTACCACCATGTCAC-TGTTTAGCACAATTTTATGTGGCTGATGGCAAATTATCTTG 662 Query 35641 CCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATA 35700 | |||||| || |||| | || | || || || ||||| || ||||| || || Sbjct 663 CTTGTTGTACCAAAGAAGTGCTGACATGGGCTTAGGGGTGCCATTTAATATAGCTAGTTA 722 Query 35701 CTCTCTTCTGACTCATCTGATGGC 35724 ||||| || || ||| |||| || Sbjct 723 TTCTCTGCTCACACATATGATTGC 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981052105791915