Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq237220 518 4e-142 seq562919 131 2e-25 seq601675 100 4e-16 seq61515 89.7 6e-13 seq216693 84.2 3e-11 >seq237220 Length=3575 Score = 518 bits (574), Expect = 4e-142 Identities = 1181/1760 (67%), Gaps = 38/1760 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || || | ||| ||||| || ||||||| ||| | ||||| |||||| Sbjct 2441 GCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAAAAA 2382 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| |||| || ||| |||| || || | ||| ||||| | |||||||||| Sbjct 2381 TGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACATGTATATTAAAAGATTGACTT 2322 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || ||||| | || |||||||||| ||| | || || || ||||||| Sbjct 2321 TGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAAATTTCC 2262 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGA 62302 |||| || ||||| || || | || | ||| || | || |||| || || || Sbjct 2261 CAAACTGTCTTATATAAGTCTCGTATT-TCTGTAGGTATACTTTCGATATTTTGTATAGA 2203 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| || ||||| ||| || || || |||| |||||| | | || || | Sbjct 2202 TCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATCCCATAAATCTGCTTCTGTCAG 2143 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATAC---TCTCCGAGT 62419 | | | ||| | ||| | || || ||||| ||||||||||| || || ||| || Sbjct 2142 ATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGA-- 2085 Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479 ||||||||| || | ||||| | || ||||||||||| ||||| || || ||||| Sbjct 2084 -TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGA 2026 Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 62537 ||||| ||||| ||||| | ||| | | ||| | ||| || ||| | | || || Sbjct 2025 GGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCC--ATGCTTAGCAATGTTT 1968 Query 62538 TCTTTTA--GATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATT 62595 | ||||| || || ||| | ||| | ||| | || | || | Sbjct 1967 TTTTTTAAAGAAGT--CCAGTCCCATAAATCTGTTGGATTTTTATTCCACATTTCGTACT 1910 Query 62596 GTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAG 62655 ||| ||||| ||| || ||| | ||||| || || ||| | ||| || | Sbjct 1909 GTAATATACCTAGACTTGCAGGGCTCCCTTCGTATGTTTCGTACACTCCATACTTTTCTG 1850 Query 62656 CTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTA 62715 ||| || |||||| || |||||||| || || ||||| |||||||| || | | ||||| Sbjct 1849 CTAATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTA 1790 Query 62716 GATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62775 | | ||||| || || || | || || | | |||||| || || || | | Sbjct 1789 GTTTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGAC 1730 Query 62776 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62835 |||||||||| || || ||||||| ||| || ||| || ||| ||||| |||| || Sbjct 1729 CTTGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAG 1670 Query 62836 GATAATAATTAATATCTATAATTTTATTGAGATTT-CTG--ACAATTACTTTGACCACAT 62892 |||||||||| | || || |||||||| | |||| ||| ||| || || || | Sbjct 1669 GATAATAATTTACGTCAATGATTTTATTCAAATTTTCTGTTACAGTT---TTAGTAACTT 1613 Query 62893 CCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTACAAACATGTTCAATGCAACAG 62949 | || | ||| ||||| | || ||| | |||||||| || | |||| || Sbjct 1612 CTTTTAATTTCGCAAAATTATATGTTTTGTTATCATTAACAAACATATTTAGGGCAATAG 1553 Query 62950 ATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 63009 | || | || || || || || |||| | || | | ||| || ||| |||||||| | Sbjct 1552 AAGCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACA 1493 Query 63010 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63069 | |||||||| || || || |||||||||| |||||||| ||| | ||||| | ||| | Sbjct 1492 GGTTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTT 1433 Query 63070 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63129 || | | ||| ||||||||||||| || | |||| |||||| || |||||||| | | Sbjct 1432 TAAATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGTA 1373 Query 63130 CTCGAGC-CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGT--ATACAATC 63186 || | || ||| || | | | |||| ||||| |||| |||| | ||| || Sbjct 1372 CTTGTGCTCTTACTTGTTTA-ATAAATCTATTTTCTTTTTC--ATAGGTTTCATATAAGG 1316 Query 63187 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACG 63246 ||| || || | ||||||| | | || | ||| || || | |||||||| | | Sbjct 1315 ATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGG 1256 Query 63247 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63306 ||| | || |||| | |||| |||||| || |||||||| ||||| | || || Sbjct 1255 TCCATACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAA 1196 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | || || || | | ||| || ||||| || || || || | ||| | ||| | | Sbjct 1195 AAAGTTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTTTCTTTAAATCTAAGAATTCAA 1136 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 ||||| | |||||| ||||| || || | || | | | ||||| || || || |||| Sbjct 1135 ATATATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTC 1076 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 | ||||| | |||||||| || ||||| ||||||| |||||||| | || ||| |||| Sbjct 1075 CTTGATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTG 1016 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT--AATTGATAG 63544 | | |||||| || || | ||||| || | || | ||| | | | || | Sbjct 1015 ACACACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATA-CAGTGGACATG-GAC 958 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| ||||| ||||| |||||| || || || || | ||||| || || || || || Sbjct 957 ACCAATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATCCC 898 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 ||||||||||||||| |||| | ||||||||| || | || | || | ||| Sbjct 897 TTCTATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGT 838 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 | | || ||||||||||| || || || || |||| |||||||||| ||| || Sbjct 837 TGCAGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAATTATA 778 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 || | || |||| || ||||| ||||||||| | | || | ||| ||||| Sbjct 777 TGTATTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGACACTCTCATCAACAT 718 Query 63785 GTGCTGAGGTCTTTCAACAA 63804 || ||||||| |||| ||| Sbjct 717 ATGTTGAGGTCGTTCAGCAA 698 >seq562919 Length=404 Score = 131 bits (144), Expect = 2e-25 Identities = 147/196 (75%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || |||||||| ||||| || || | |||||| ||||| || |||||||| || || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || || || ||||||||||| || |||||||||| || ||| || || || | || | Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACC--AAATGTTGCAG 113 Query 33753 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || || ||||||| | |||||||||| || ||||| |||||||| || | |||| Sbjct 112 TCTTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTT 53 Query 33808 CTATGGCATTAAAGAG 33823 | ||||||||||| || Sbjct 52 CAATGGCATTAAACAG 37 >seq601675 Length=487 Score = 100 bits (110), Expect = 4e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || ||||| || | ||| ||||||||| ||||||| ||||| ||||| ||||| || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 || ||||||||||| ||||| || | || |||||| |||||| || |||| ||| Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 ||||| || || || || || ||||| || || | ||||| || || || Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAA 197 >seq61515 Length=491 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074 ||||||||||||| || |||| |||||||| || | |||||||| |||| ||||||| Sbjct 412 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 353 Query 64075 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64134 | ||||| | ||||| || || || | || || || ||| | || | || || | Sbjct 352 CTGGATGATCAGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 293 Query 64135 TTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 ||||||||||| || ||||| | ||||| || Sbjct 292 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 259 >seq216693 Length=574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074 |||| |||||||| || |||| |||||||| || | |||||||| |||| ||||||| Sbjct 80 GTTTCTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 139 Query 64075 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64134 | ||||| | ||||| || || || | || || || ||| | || | || || | Sbjct 140 CTGGATGATCGGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 199 Query 64135 TTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 ||||||||||| || ||||| | ||||| || Sbjct 200 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624519944366640