Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq237220 616 1e-171 seq601675 116 3e-21 seq562919 95.1 1e-14 >seq237220 Length=3575 Score = 616 bits (682), Expect = 1e-171 Identities = 1219/1781 (68%), Gaps = 36/1781 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || || | ||| | ||| | || | |||||||| || ||||||||| || ||| Sbjct 2468 TCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCTGTT 2409 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| | ||||| |||||||| ||| || | || |||| | || | | Sbjct 2408 TTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGCTCA 2349 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | |||||||||||||| ||||| || || | || || |||||| Sbjct 2348 GCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCATT 2289 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | || | |||||| || || |||||||| || ||||||| | | ||| || | Sbjct 2288 TGTATTGTTG--TTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTAT-TTCT 2232 Query 37028 CT-GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | |||| | || | || ||| ||||| ||||||| | ||| ||| || || Sbjct 2231 GTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCATT 2172 Query 37084 TCATTATTCCACATATTT-CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 || | || ||| | || | || || | || || | | | || |||||||||| || Sbjct 2171 TCCTCATCCCATAAATCTGCTTCTG-TCAGATCACGAAGCAAATGGTGATTTACAACTTG 2113 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| ||||||||||| || | |||| ||| ||||| ||| | ||||||| || || Sbjct 2112 AAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGATTC 2053 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||| | ||| || || | ||| || ||||| |||||||||||||| | ||| ||| Sbjct 2052 ATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAATT 1993 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | | ||||| || ||| | ||||||| | |||| ||||||||||||||||| Sbjct 1992 GCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGG 1933 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 || || |||||| || || |||| |||||| ||| || || | | ||||| Sbjct 1932 ATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCGTATGT 1873 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 || || ||| || ||| |||| ||| ||||| | ||||| ||| |||| || || Sbjct 1872 TTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGTAAAT 1813 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 ||||| || |||||| ||||| | | | |||||| || ||| | | | | || Sbjct 1812 AGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAACGCAT 1753 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 ||| ||||| ||||||| | ||| |||||||| || || || |||| ||| | ||| Sbjct 1752 TAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAAAATT 1693 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 ||| | | ||| || ||||||||||| | || || |||||||| | ||||| Sbjct 1692 GGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAATTTTC 1633 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAA---TACGTTATTATTAAC 37679 || |||| |||| | | | || || | || || | | ||||| |||||| Sbjct 1632 TGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTTATCATTAAC 1573 Query 37680 AAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAA 37739 ||| || | | | |||||| ||| || ||||| || |||||||| || |||| Sbjct 1572 AAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAA 1513 Query 37740 TTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGA 37799 || || || || || || || ||||| || |||| || || ||||| | ||||| Sbjct 1512 TTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTGATTACT 1453 Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859 |||| ||||||| ||||||||| ||| || || || || || |||| |||||| || Sbjct 1452 TTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTC 1393 Query 37860 GATAATAGATTTCCATA-AACTTCTTGCTTTAACGATCGCTTTAAt-----ttttttCTT 37913 || || | |||||| | |||| |||| | || | | |||||| | ||||||| Sbjct 1392 TATTATTGCTTTCCAAAGTACTT-GTGCTCTTAC--TTG-TTTAATAAATCTATTTTCTT 1337 Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTG 37972 |||| || | |||||| | ||| || || ||||| ||| || ||| || | Sbjct 1336 --TTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCCCA-ACAGTCAGCTAACCCAG 1280 Query 37973 GACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATA 38032 | || ||| |||||||| || | |||| | |||| ||||| || | || ||| || | Sbjct 1279 GGCAATCGTGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAA 1220 Query 38033 AATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACAT 38092 |||||||| ||| |||||| ||| | || ||| | |||||| || || | Sbjct 1219 GATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCC-AGTG 1161 Query 38093 TCTTTCTT--AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 | |||||| || || || || || |||||||| || ||||||||||||| ||| | | Sbjct 1160 TTTTTCTTTAAATCTAAG-AATTCAAATATATCGGCATGCCATGGTTCTAAATAGACTGC 1102 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | || || || | |||| |||||| |||| || ||||||| |||| ||||| || | Sbjct 1101 AAAAGCACCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAAC 1042 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 || |||||| ||||| | |||||| || || ||| | || | |||||||||||| || Sbjct 1041 TCGTAACATTGGTACAAGACCATTTGACACACCATTTGTTCCTGCTATATAAGTACCTTT 982 Query 38271 AGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 ||| | ||| | | || |||| || |||||||||||| ||| ||||| ||||| Sbjct 981 AGCCCTTATACAGTGGACATGGACA--CCAATTCCACCTGCAGATTTAGATATCAAAGCA 924 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 || || ||||| ||||| | || |||||||| || ||||| || || | || || |||| Sbjct 923 CACTGCTTTAAGGTATCGTAAATCCCTTCTATGCTATCATCTTTCATAGCTATTAGAAAA 864 Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 || || | ||||| ||||||| | ||| ||||| ||||| ||||| || Sbjct 863 CATGACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGGCATGAGTG 804 Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGA 38508 || |||| || || | |||||||||| | ||| | |||| ||||| | || ||| Sbjct 803 AAATATTTCTCAGAAAGTAAATTATATGTATTTATGGCTGCATCAATATCTTCACCATGA 744 Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || || | || || ||||| | ||||||||| |||| ||| Sbjct 743 ATTCCAATGGACACTCTCATCAACATATGTTGAGGTCGTTC 703 >seq601675 Length=487 Score = 116 bits (128), Expect = 3e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | ||||||||||| | | ||||||||| ||||||| ||||||||| || Sbjct 379 ATCTCTGATGTATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGC 320 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 ||| || || ||||||||||||| |||||| | ||| || || || ||||||| | Sbjct 319 TATCTGGAAGCCATAGAAACATCTTGCCTCAG-TCACTTGAACTTCTTGTGAAAATCTCT 261 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 | |||| || ||||||||||| || || || ||||| ||||| || | ||| || | Sbjct 260 CAACTAAGTTTTCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGA 201 Query 12069 TAAAGT 12074 | |||| Sbjct 200 TGAAGT 195 >seq562919 Length=404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || |||||| ||||| | ||| ||||| | || | ||||| | ||| || || Sbjct 245 ATAAGCTCATTACTGAATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATG 186 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || |||||||| || ||||||||||| || || | |||||| Sbjct 185 GAAGCAAAACTGCCCGAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCA 126 Query 11786 CCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| | | | | ||||| | ||||| | | ||||||||||||||||| ||||| Sbjct 125 CCAAATGTTGCAGTCTTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACA 66 Query 11843 CATTCCATTGTTTCTATAGCGTTAAA 11868 || | ||||| || || ||||| Sbjct 65 CAGGGAAGAGTTTCAATGGCATTAAA 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 464583844640720