Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq237220 531 7e-146 seq562919 123 3e-23 seq601675 105 9e-18 seq61515 84.2 3e-11 >seq237220 Length=3575 Score = 531 bits (588), Expect = 7e-146 Identities = 1178/1753 (67%), Gaps = 32/1753 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| || || | ||| ||||| || ||||||| ||| | ||||| |||||| Sbjct 2441 GCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAAAAA 2382 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || ||| |||| || ||| |||| || || | ||| ||||| | |||||||||| Sbjct 2381 TGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACATGTATATTAAAAGATTGACTT 2322 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| || || ||||| | || |||||||||| ||| | || || || ||||||| Sbjct 2321 TGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAAATTTCC 2262 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGA 65095 |||| || ||||| || || | || | ||| || | || |||| || || || Sbjct 2261 CAAACTGTCTTATATAAGTCTCGTATT-TCTGTAGGTATACTTTCGATATTTTGTATAGA 2203 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 |||| || ||||| ||| || || || |||| |||||| | | || || | Sbjct 2202 TCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATCCCATAAATCTGCTTCTGTCAG 2143 Query 65156 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGT 65212 | | | ||| | ||| |||| || ||||||||||||||||| || || ||| || Sbjct 2142 ATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGA-- 2085 Query 65213 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 65272 ||||||||| || | ||||| | ||| ||||||||||| ||||| || || ||||| Sbjct 2084 -TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGA 2026 Query 65273 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 65330 ||||| ||||| ||||| | ||| | | ||| | ||| || ||| | | || || Sbjct 2025 GGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCC--ATGCTTAGCAATGTTT 1968 Query 65331 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 65390 | ||||| || ||| | ||| | ||| | || ||| Sbjct 1967 TTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGATTTTTATTCCACATTTCGTACTGT 1908 Query 65391 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450 | ||||| ||| || ||| | ||||| ||||| ||| | ||| || ||| Sbjct 1907 AATATACCTAGACTTGCAGGGCTCCCTTCGTATGTTTCGTACACTCCATACTTTTCTGCT 1848 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 65510 | ||||||||| || |||||||| || || ||||| ||||| || || | | |||||| Sbjct 1847 AATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTAGT 1788 Query 65511 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 65570 | ||||| | || || | || || | | |||||| || || || | ||| Sbjct 1787 TTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGACCT 1728 Query 65571 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 65630 |||||||| || || ||||||| ||| || ||| || ||| ||||| |||| |||| Sbjct 1727 TGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGA 1668 Query 65631 TAATAATTAATATCTATAATTTTATTGAGATTT-CTG--ACAATTACTTTGACCACATCC 65687 |||||||| | || || |||||||| | |||| ||| ||| || || || || Sbjct 1667 TAATAATTTACGTCAATGATTTTATTCAAATTTTCTGTTACAGTT---TTAGTAACTTCT 1611 Query 65688 TTCAGTTTGAGAAAATCAAATCGCTC---ATCTATTACAAACATGTTCAATGCAACAGAT 65744 || | ||| ||||| | || | ||| | |||||||| || | |||| ||| Sbjct 1610 TTTAATTTCGCAAAATTATATGTTTTGTTATCATTAACAAACATATTTAGGGCAATAGAA 1551 Query 65745 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 65804 || | || || || || || |||| | || | | ||| || ||| |||||||| || Sbjct 1550 GCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAGG 1491 Query 65805 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 65864 |||||||| || ||||| |||||||||| |||||||| ||| | ||||| | ||| ||| Sbjct 1490 TTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTA 1431 Query 65865 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 65924 | | ||| ||||||||||||| || | |||| |||||| || |||||||| | ||| Sbjct 1430 AATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGTACT 1371 Query 65925 CGAGC-CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC 65983 | || ||| || | | | |||| |||||| |||| || | ||| || ||| Sbjct 1370 TGTGCTCTTACTTGTTTA-ATAAATCTATTTTCTTTTTCATAGGTTTCATATAAGGATTC 1312 Query 65984 GAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 66043 || || | ||||||| | | || ||||| || || | |||||||| | | ||| Sbjct 1311 AAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGGTCCA 1252 Query 66044 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA 66103 | || |||| | |||| |||||| || |||||||| ||||| | || ||||| || Sbjct 1251 TACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGC-ATAAAAAA 1193 Query 66104 -ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 66162 || |||| | ||| || ||||| || || || || | ||| | ||| | | | Sbjct 1192 GTTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTTTCTTTAAATCTAAGAATTCAAATA 1133 Query 66163 TATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 66222 |||| |||||| ||||| || || | || | | | ||||| || || || ||||| | Sbjct 1132 TATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTCCTT 1073 Query 66223 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 66282 |||| | |||||||| || ||||| ||||||| |||||||| | || |||||| || Sbjct 1072 GATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGACA 1013 Query 66283 TACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT--AATTGATAGACC 66340 |||||| || || | ||||| | || | || | ||| | | | || | ||| Sbjct 1012 CACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATA-CAGTGGACATG-GACACC 955 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 ||||| ||||| |||||| || || || || | ||||| ||||| || || || || Sbjct 954 AATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATCCCTTC 895 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 ||| |||||||| |||| | ||||||||| || | || | || |||| | Sbjct 894 TATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGC 835 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 || ||||||||||| || || || || |||| |||||||||| ||| || || Sbjct 834 AGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAATTATATGT 775 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 | || |||| || ||||| ||||||||| | | || | ||| ||||| || Sbjct 774 ATTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGACACTCTCATCAACATATG 715 Query 66581 CTGAGGTCTTTCA 66593 ||||||| |||| Sbjct 714 TTGAGGTCGTTCA 702 >seq562919 Length=404 Score = 123 bits (136), Expect = 3e-23 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || |||||||| ||||| || || | |||||| ||||| || ||||| ||||| || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--C 36326 || || || ||||||||||| || |||||||||| || ||| || ||| | ||| | Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACCAAATGTTGCAGTC 111 Query 36327 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | | || ||||||| | |||||||||| || ||||| |||||||| || | || || Sbjct 110 TTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTTCA 51 Query 36386 ATAGCATTAAAGAG 36399 || |||||||| || Sbjct 50 ATGGCATTAAACAG 37 >seq601675 Length=487 Score = 105 bits (116), Expect = 9e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 |||||||| || | ||| ||||||||| ||||||| ||||| ||||| || || || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || ||||||||||| ||||| || | || |||||| |||||| || |||| ||| Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 ||||| || || ||||| || ||||| || || | ||||| || || || Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAA 197 >seq61515 Length=491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 66808 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAAT 66867 |||||||||||||||| |||| ||||||| || | || ||||| | || ||||||| Sbjct 412 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 353 Query 66868 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 66927 | ||||| | ||||| || || || | || || || ||| | || | || || | Sbjct 352 CTGGATGATCAGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 293 Query 66928 TTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 ||||||||||| || ||||| | |||||| || Sbjct 292 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652636637082920