Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq237220 609 3e-169 seq562919 141 1e-28 seq601675 113 6e-20 seq61515 89.7 7e-13 seq216693 84.2 3e-11 >seq237220 Length=3575 Score = 609 bits (674), Expect = 3e-169 Identities = 1195/1752 (68%), Gaps = 30/1752 (2%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| || || | ||| ||||| || ||||||| ||| | ||||| || ||| Sbjct 2441 GCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAAAAA 2382 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || ||| |||| || ||| |||| || || | ||| ||||| | |||||||||| Sbjct 2381 TGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACATGTATATTAAAAGATTGACTT 2322 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| || || ||||| | || |||||||||| ||| | || || || ||||||| Sbjct 2321 TGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAAATTTCC 2262 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGA 78974 |||| || ||||| || || | || | ||| || | || |||| || || || Sbjct 2261 CAAACTGTCTTATATAAGTCTCGTATT-TCTGTAGGTATACTTTCGATATTTTGTATAGA 2203 Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034 |||| || ||||| ||| || || || |||| |||||| | | || || | Sbjct 2202 TCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATCCCATAAATCTGCTTCTGTCAG 2143 Query 79035 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGT 79091 | | | ||| | ||| |||| || ||||||||||||||||| || || ||| || Sbjct 2142 ATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGA-- 2085 Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151 ||||||||| || | ||||| | |||||||||||||| ||||| || || ||||| Sbjct 2084 -TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGA 2026 Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTA 79209 || || ||||| ||||| | ||| | | ||| | ||| || ||| | | || || Sbjct 2025 GGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCC--ATGCTTAGCAATGTTT 1968 Query 79210 TCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGT 79269 | ||||| ||| ||| ||||| | ||| | || |||||| | || || ||| Sbjct 1967 TTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGATTTTTATTCCACATTTCGTACTGT 1908 Query 79270 AGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCT 79329 | ||||| ||| || ||| ||||||||| || ||| | |||||| ||| Sbjct 1907 AATATACCTAGACTTGCAGGGCTCCCTTCGTATGTTTCGTACACTCCATACTTTTCTGCT 1848 Query 79330 AATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGA 79389 ||||||||||| || ||||||||||| || ||||| ||||| || || | | ||| || Sbjct 1847 AATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTAGT 1788 Query 79390 TCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 79449 | |||||| | || || | || || | | |||||| || || || | ||| Sbjct 1787 TTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGACCT 1728 Query 79450 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 79509 |||||||| || || ||||||| ||| || ||| || ||| ||||| |||| |||| Sbjct 1727 TGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGA 1668 Query 79510 TAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTAC---TTTGACCACATCC 79566 |||||||| | || || |||||||| | ||| || |||| ||| || || Sbjct 1667 TAATAATTTACGTCAATGATTTTATTCAAATTTT---CTGTTACAGTTTTAGTAACTTCT 1611 Query 79567 TTTAGTTTGAGAAAATCAAATCGTCC---ATCTATTACAAACATGTTCAACGCGACAGAT 79623 |||| ||| ||||| | || | ||| | |||||||| || | || | ||| Sbjct 1610 TTTAATTTCGCAAAATTATATGTTTTGTTATCATTAACAAACATATTTAGGGCAATAGAA 1551 Query 79624 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGG 79683 || | || || || || || |||| | || | | ||| || |||||||||||| ||| Sbjct 1550 GCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAGG 1491 Query 79684 TTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 79743 |||||||| |||||||| |||||||||| |||||||| ||| | ||||| | ||| ||| Sbjct 1490 TTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTA 1431 Query 79744 TAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 79803 | | ||| | ||||||||||| || | |||| |||||| || |||||||| | ||| Sbjct 1430 AATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGTACT 1371 Query 79804 CGAGC-CTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC 79862 | || ||| || | | | |||| |||||| |||| || | |||||| ||| Sbjct 1370 TGTGCTCTTACTTGTTTA-ATAAATCTATTTTCTTTTTCATAGGTTTCATATAAGGATTC 1312 Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 || || | ||||||| || |||| ||||| || |||| ||||||||| | | ||| Sbjct 1311 AAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGGTCCA 1252 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 | ||||||| | |||| |||||| || |||||||| ||||| | || ||| || Sbjct 1251 TACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAG 1192 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 || |||| | || || ||||| || || || || | ||| | ||| | | || Sbjct 1191 TTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTTTCTTTAAATCTAAGAATTCAAATAT 1132 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 ||| | |||||| ||||| || || | || | | | || || || || || ||||| || Sbjct 1131 ATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTCCTTG 1072 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 ||| | |||||||| || ||||| ||||||| |||||||| | || |||||| || Sbjct 1071 ATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGACAC 1012 Query 80163 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT--AATTGATAGACCT 80220 |||||| || || | ||||| | || | || | ||| | | | || | ||| Sbjct 1011 ACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATA-CAGTGGACATG-GACACCA 954 Query 80221 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 80280 ||||| ||||| |||||| || || || || | ||||| ||||| || || || ||| Sbjct 953 ATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATCCCTTCT 894 Query 80281 ATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 80340 ||||||||||| |||| | ||||||||| || | || | || |||| | Sbjct 893 ATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGCA 834 Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 || ||||||||||| || || || || |||| ||||| |||| ||| || || Sbjct 833 GCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAATTATATGTA 774 Query 80401 TCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGC 80460 | || |||| || ||||| ||||||||| | | || | ||| ||||| || Sbjct 773 TTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGACACTCTCATCAACATATGT 714 Query 80461 TGAGGTCTTTCA 80472 ||||||| |||| Sbjct 713 TGAGGTCGTTCA 702 >seq562919 Length=404 Score = 141 bits (156), Expect = 1e-28 Identities = 152/198 (77%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACC 50068 || |||||||| ||||| || || | |||||| ||||| || ||||| ||||| || || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128 |||||| | ||||||||||| || ||||||||||||| ||| || || || || || Sbjct 170 GAGAAAA--ATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACC--AAATGTTGC 115 Query 50129 TGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 50183 ||| || ||||||| | |||||||||| || ||||| |||||||| || | || Sbjct 114 AGTCTTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGT 55 Query 50184 TTCTATGGCATTAAAGAG 50201 ||| ||||||||||| || Sbjct 54 TTCAATGGCATTAAACAG 37 >seq601675 Length=487 Score = 113 bits (124), Expect = 6e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || ||||| || | ||| ||||||||| ||||||| ||||| ||||| ||||| || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || ||||||||||| ||||| || | || |||||| |||||| ||| |||| ||| Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 ||||| || || ||||| || ||||| || || | ||||| || || || ||| Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAAGTGT 193 >seq61515 Length=491 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 80687 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAAT 80746 ||||||||||||| || |||| ||||||| || | |||||||| | || ||||||| Sbjct 412 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 353 Query 80747 CTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 80806 ||||||| | ||||| || || || | || || || ||| | || | || || | Sbjct 352 CTGGATGATCAGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 293 Query 80807 TTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 ||||||||||| || ||||| | |||||| || Sbjct 292 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 259 >seq216693 Length=574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 80687 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAAT 80746 |||| |||||||| || |||| ||||||| || | |||||||| | || ||||||| Sbjct 80 GTTTCTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 139 Query 80747 CTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 80806 ||||||| | ||||| || || || | || || || ||| | || | || || | Sbjct 140 CTGGATGATCGGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 199 Query 80807 TTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 ||||||||||| || ||||| | |||||| || Sbjct 200 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712227144837320