Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq237220 533 2e-146 seq562919 127 3e-24 seq601675 114 2e-20 seq61515 98.7 1e-15 seq216693 93.3 6e-14 >seq237220 Length=3575 Score = 533 bits (590), Expect = 2e-146 Identities = 1183/1771 (67%), Gaps = 26/1771 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 |||||||| || | | || || | ||| || || | ||| ||||| |||||||||| | Sbjct 2462 GTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAA 2403 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | ||||| |||||||| ||| |||| || || | || || || | Sbjct 2402 CCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACA 2343 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || ||||| | || ||||||||||| || || ||||| | || |||||||||| ||| Sbjct 2342 TGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATT 2283 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 71039 | || || || ||||||||||| || ||||| || || | || | ||| || | Sbjct 2282 GTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATT-TCTGTAGGTAT 2224 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 || |||| || || |||||| || ||||| |||||| || || |||| Sbjct 2223 ACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATC 2164 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 |||||| | | || || | | | | ||| | ||| |||| || |||||||||||||| Sbjct 2163 CCATAAATCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCC 2104 Query 71157 AGACAATAC---TCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATT 71213 ||| || || ||| || ||||||||| || | ||||| | || |||||||| Sbjct 2103 AGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATT 2047 Query 71214 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAG 71273 ||| ||||| || || ||||| ||||| ||||| ||||| | ||| ||| ||| | ||| Sbjct 2046 TCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAG 1987 Query 71274 ACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAA 71332 ||||| | | | || || | ||||| ||| ||| | ||| | ||| | ||| Sbjct 1986 GCCATGCTTAGCA-ATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGATTTT 1928 Query 71333 CNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGT 71392 || || ||| || ||| | ||||| |||| Sbjct 1927 TATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCGTATGTTTCGT 1868 Query 71393 ATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTT 71452 | ||| | ||||| |||| ||||||||| || |||||||||||||| ||||| |||| Sbjct 1867 ACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTT 1808 Query 71453 CGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAA 71512 | || || | | ||| || | ||||| || || || | || || | | || Sbjct 1807 CAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAA 1748 Query 71513 TAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAA 71572 |||| || || || | |||||||| || || || ||||||| || || ||| || Sbjct 1747 TAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATT 1688 Query 71573 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTA 71632 ||| ||||| |||| |||||||||||| | || || |||||||| | |||| || Sbjct 1687 TTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAATTTT---CTG 1631 Query 71633 TTAC---TTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC---ATCTATTACAA 71686 |||| ||| || || |||| ||| ||||| | || | ||| | |||| Sbjct 1630 TTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTTATCATTAACAA 1571 Query 71687 ACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATT 71746 ||| || | ||||| ||| || | || || || || || |||| | || | | ||| Sbjct 1570 ACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATT 1511 Query 71747 GTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 71806 || ||||||||||| || |||||||| || ||||| |||||||||| |||||||| | Sbjct 1510 CTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTT 1451 Query 71807 TTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTA 71866 || | ||||| | ||| ||| | | || | ||||||||||| || | |||| ||||| Sbjct 1450 TTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTA 1391 Query 71867 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGT 71926 | || |||||||| | ||| | || ||| | || | |||| |||||| |||| | Sbjct 1390 TTATTGCTTTCCAAAGTACTTGTGCTCTTACTTGTTTAATAAATCTATTTTCTTTTTCAT 1331 Query 71927 ATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCAT 71986 | | |||||| ||| || || | ||||||| | |||| ||||| || || | Sbjct 1330 AGGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGT 1271 Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046 |||||||| | | ||| | ||||||| | |||| |||||| || |||||||| | Sbjct 1270 GAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTA 1211 Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||| | || ||| || || |||| | || || ||||| || || || || | Sbjct 1210 TCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTTTCTTTA 1151 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 ||| | ||| | | ||||| | |||||| ||||| || || | || | | | || | Sbjct 1150 AATCTAAGAATTCAAATATATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAG 1091 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | || || || ||||| ||||| | |||||||| || ||||| ||||||| ||||||| Sbjct 1090 GGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTG 1031 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT-- 72284 | | || |||||| || ||||||| || || | ||||| | || | || | || Sbjct 1030 GTACAAGACCATTTGACACACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATAC 971 Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344 | || || | | ||| ||||| ||||| |||||| || || || || | ||||| Sbjct 970 AGTGGACATGG--ACACCAATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAA 913 Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 ||||| || || || ||||| |||||||| |||| | ||||||||| || | Sbjct 912 GGTATCGTAAATCCCTTCTATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAG 853 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 || | || |||| | || ||||||||||| || || || || |||| || Sbjct 852 CTGAGGGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTC 793 Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGC 72524 ||| |||| ||| || || | || |||| || ||||| ||| ||||| | | Sbjct 792 AGAAAGTAAATTATATGTATTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGA 733 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCA 72555 || | ||| |||||||| ||||||| |||| Sbjct 732 CACTCTCATCAACATATGTTGAGGTCGTTCA 702 >seq562919 Length=404 Score = 127 bits (140), Expect = 3e-24 Identities = 146/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || |||||||| ||||| || || | |||||| ||||| || || || ||||| || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--C 42233 || || || ||||||||||| || |||||||||| || ||| || ||| | ||| | Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACCAAATGTTGCAGTC 111 Query 42234 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | | || ||||||| | |||||||||| || ||||| |||||||| || | ||||| Sbjct 110 TTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTTCA 51 Query 42293 ATGGCATTAAAGAG 42306 ||||||||||| || Sbjct 50 ATGGCATTAAACAG 37 >seq601675 Length=487 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 |||||||| || | ||| ||||||||| ||||||| ||||| ||||| ||||| || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || ||||||||||| ||||| || || || |||||| |||||| ||| |||| ||| Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 || || || || ||||| || ||||| || || | ||||| || || || Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAA 197 >seq61515 Length=491 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 72770 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 72829 ||||||||||||| || |||| ||||||| || | |||||||| |||| ||||||| Sbjct 412 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 353 Query 72830 CTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCG 72889 ||||||| | ||||| || || || | ||||| || ||| | || | || || | Sbjct 352 CTGGATGATCAGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 293 Query 72890 TTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 ||||||||||| || ||||| | |||||| || Sbjct 292 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 259 >seq216693 Length=574 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 72770 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 72829 |||| |||||||| || |||| ||||||| || | |||||||| |||| ||||||| Sbjct 80 GTTTCTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 139 Query 72830 CTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCG 72889 ||||||| | ||||| || || || | ||||| || ||| | || | || || | Sbjct 140 CTGGATGATCGGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 199 Query 72890 TTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 ||||||||||| || ||||| | |||||| || Sbjct 200 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493971343880