Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq51755 223 3e-53 seq608441 113 5e-20 seq26808 107 2e-18 seq255931 86.0 6e-12 seq387503 82.4 8e-11 >seq51755 Length=2487 Score = 223 bits (246), Expect = 3e-53 Identities = 358/504 (71%), Gaps = 8/504 (2%) Strand=Plus/Minus Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461 |||| || ||||| ||||| |||||||| || ||||||||||| |||||||| |||||| Sbjct 1490 CCGAGGTCAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCG 1431 Query 19462 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGAT-AAACGTCTGCCGTACGCT 19520 ||||| ||||| |||| || | |||| || || | | ||||| | || | | Sbjct 1430 AAGAACTTCCAGGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGG-TCACGCTTGGT 1372 Query 19521 CTTGTCG-TGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCA 19579 || ||| || | | | | || || || | | ||||||||| || |||||||||| | Sbjct 1371 TTTATCGGTGAAGAAGA-AGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGA 1313 Query 19580 CTTTTAGATGAGGGTTCGCCAATTTGG-CTGCCATAAGTTGGCCAAAGTTGCCTTTGTAC 19638 |||| | || ||||| ||| |||| || || || || ||||| |||||||| Sbjct 1312 TCTTTAAACCAGTATTCGCTTGTTTCAACTGC-ATCAGCTGCCCGAAGTTACCTTTGTAG 1254 Query 19639 GGTTCGTTCCATG-CGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTG 19697 || |||||||| | || | | |||||| | || ||||| | ||||||||| |||||||| Sbjct 1253 GGCTCGTTCCAGGACGATAATCCCTTTT-GAGGCTTCTGCAGGGCCGCCCAGGGATCGTG 1195 Query 19698 AATGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCC 19757 || | || |||||||| |||| ||| || ||||| ||||| |||| |||||||| Sbjct 1194 GATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCC 1135 Query 19758 CGGGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTA 19817 | ||| | ||||||||||| || ||||| || || || | ||| ||||| Sbjct 1134 TTCAATTTCTTTCAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTA 1075 Query 19818 CAACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACAC 19877 | |||||| | || |||||| || | || ||||| |||| || |||||||| Sbjct 1074 AAGCAAATGAGTCAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACAC 1015 Query 19878 ACCCCATTCGACAAAGTATGCACC 19901 ||||||||||| ||||| || || Sbjct 1014 GCCCCATTCGACGAAGTAGGCGCC 991 >seq608441 Length=509 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||||||| | ||| | |||||| |||||||| ||| Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCA 445 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | ||||| || |||||||| ||||| ||||| |||||||| ||||||| |||| Sbjct 444 GCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTT 385 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || || | || ||| ||||| | || | || || || || | ||| Sbjct 384 ACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTT 325 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 324 TTAACAAAAATCTGCAT 308 >seq26808 Length=8541 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||||||||||| ||| |||||||| || || || || || Sbjct 7608 CCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAA 7549 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||||||||| ||| |||| |||||||| || || || || Sbjct 7548 AGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGGCGGA 7489 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||| | | ||| || Sbjct 7488 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACC 7429 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| |||||||| ||||| Sbjct 7428 TCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCAT 7382 >seq255931 Length=537 Score = 86.0 bits (94), Expect = 6e-12 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461 |||| || ||||| ||||| |||||||| || |||||||| || |||||||| |||||| Sbjct 241 CCGAGGTCAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCG 182 Query 19462 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGA-TAAACGTCTGCCGTACGCT 19520 ||||| ||||| |||| || | |||| || || | | ||||| | || | | Sbjct 181 AAGAACTTCCAGGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACG-ATCACGCTTGGT 123 Query 19521 CTTGTC-GTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCA 19579 || || ||| | | | | || || || | | ||||||||| || |||||||||| | Sbjct 122 TTTATCGGTGAAGA-AGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGA 64 Query 19580 CTTTTAGATGAGGGTTCGCCAATTT-GGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTAC 19638 |||| || ||||| ||| ||| ||| || || || ||||| |||||||| Sbjct 63 TCTTTAAGCCAGTATTCGCTTGTTTCAACTG-CATCAGCTGCCCGAAGTTACCTTTGTAG 5 Query 19639 GG 19640 || Sbjct 4 GG 3 >seq387503 Length=244 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/143 (73%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 60390 TGCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGAT- 60448 ||| || ||||| || | |||||||| || | || ||| ||||| ||||||||| Sbjct 30 TGCCTCTATGTTACCGAGGTCACCGACATGGCGTACATCAGAATTGGGACCACCATGATC 89 Query 60449 -TGCTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCA 60507 || | || ||||| ||||| |||| ||||| || || ||||| || |||| ||| Sbjct 90 TTGTTTTCCA--GGATTGAAATGAGCTCCAGCCGACGTGCAACCGTTTGTGTTGTCACCA 147 Query 60508 AATTCGTGTACGTGAAAACCGTG 60530 |||||||| || || |||||||| Sbjct 148 AATTCGTGCACATGGAAACCGTG 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502749692738160