Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq608441 131 1e-25 seq26808 131 1e-25 >seq608441 Length=509 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 15164 AGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTG 15223 || || || ||||| || |||||||||||| || | | ||||||| | |||||| Sbjct 507 AGAGTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTC 448 Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCT 15282 |||||| | |||| || || || || ||||| || |||||||| |||||| ||| Sbjct 447 CCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCT 388 Query 15283 CTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342 |||||| ||||||||||||| ||| || ||||| || ||||||||||| || || Sbjct 387 -TTTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAG 329 Query 15343 AGTTTTTACAAAAATTTGCAT 15363 |||||| |||||||| ||||| Sbjct 328 AGTTTTAACAAAAATCTGCAT 308 >seq26808 Length=8541 Score = 131 bits (144), Expect = 1e-25 Identities = 177/243 (73%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| |||||||||||||| ||||| ||||| || || || || || Sbjct 7608 CCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAA 7549 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| || || | || | |||||||||||| ||| Sbjct 7548 AGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGGCGGA 7489 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| |||||| ||| || ||| |||| || || ||| | ||| || Sbjct 7488 ATACCTTCCTTGTCTTGAATTTTAGCT-TTGACATTTTCGATAGTGTCGGAAGCTTCCAC 7430 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || || |||||||| || || || || ||||| || || || ||||| | || | ||| Sbjct 7429 CTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCAT-TGTGTTACTAA 7371 Query 15376 AAT 15378 ||| Sbjct 7370 AAT 7368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359208922316133