Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq51755 212 5e-50 seq255931 96.9 3e-15 seq608441 89.7 4e-13 seq617918 87.8 1e-12 >seq51755 Length=2487 Score = 212 bits (234), Expect = 5e-50 Identities = 635/969 (66%), Gaps = 27/969 (3%) Strand=Plus/Minus Query 100327 ATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA 100386 |||||| || |||||||| | |||||| || | || || || |||| || ||||| Sbjct 1947 ATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAA 1888 Query 100387 ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCC 100446 |||| | | ||| | || |||||||| || || |||||||| ||||| || Sbjct 1887 CGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACC 1828 Query 100447 CACAATAA---TTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATC 100503 |||| | ||||| |||| || || ||| || || | | | || || Sbjct 1827 GACAACCAGCTTTTTGGGCGGA---ACACCTTGGGTCAGCAGATACCTGATACCGAAGTC 1771 Query 100504 CGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAA 100563 ||| |||| || || || ||||| ||| ||||| |||| ||| || | || | Sbjct 1770 GGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAG 1711 Query 100564 ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAAATATTTTATCGAGAAG 100623 | | ||| |||||||| || || || ||||| ||||| | || || | ||| | Sbjct 1710 AGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTA 1651 Query 100624 CTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCT 100683 ||| || || | | ||| | || || || ||||| | |||| |||||| || Sbjct 1650 CTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGA 1591 Query 100684 TGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATT 100742 |||| |||||| ||| | || || | ||| | |||| |||| ||| || |||| Sbjct 1590 GGTCAGCTCGTAAGTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTAATT 1532 Query 100743 CCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAA-GAG-TC-GGGT 100799 | |||| | | || |||| | | || | || ||| ||| || |||| Sbjct 1531 CTTTCATGA----GCTGAACGTATA--CATCTCCGTCTTTAGGACCACCGAGGTCAGGGT 1478 Query 100800 TGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACA 100859 | |||||||||||||| || |||||||| ||||| || || || || || |||||||| Sbjct 1477 TAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGG 1418 Query 100860 CCTGCAAAAATTCCTTGACCGAGTCCACAAA-----CACGCGCCGTTTTTCCGCATCGTG 100914 || | || || || || ||| | || || ||||| ||||| || ||| Sbjct 1417 TTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCG----GTG 1362 Query 100915 CATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTG 100974 | ||| |||| || |||| ||| |||||||| || || || || | || || | Sbjct 1361 AA-GAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACC 1303 Query 100975 CGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCA 101034 | ||| || | || | ||| ||||| ||||| || || ||||| ||||||||||| Sbjct 1302 AGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCA 1243 Query 101035 TGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTT 101094 | || | |||||||| || || || | || |||||||||||||| || | || || Sbjct 1242 GGACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTT 1183 Query 101095 GAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTT 101154 ||| ||| ||| || |||| || ||||||| |||| ||||||||| ||| ||| Sbjct 1182 GAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTT 1123 Query 101155 GAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGA 101214 | ||| |||| ||| || || || ||||| || ||||| ||||| | || ||| | Sbjct 1122 CAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGT 1063 Query 101215 GAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTAC 101274 || || || | ||| | ||| || || || || | ||||||||||| || || Sbjct 1062 CAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGAC 1003 Query 101275 AAAATACGC 101283 || || || Sbjct 1002 GAAGTAGGC 994 >seq255931 Length=537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 332/510 (65%), Gaps = 21/510 (4%) Strand=Plus/Minus Query 100527 TCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTT 100586 ||||| ||| ||||| |||| ||| |||| || | | | ||| |||||||| || | Sbjct 498 TCCAAGACGGAGCGTACAGAGCGGTCTGGTGTCCGAGAGTGTCGTTAGACCAGGCACCCT 439 Query 100587 TAAAATCGTAGCTCATAAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTA 100646 | || ||||| ||||| | || || | || | ||| || || | | ||| | | Sbjct 438 TGAAGTCGTAACTCATGACGAAAATATGGTCCATGTACTTCTGGGCTTCCTTGTAGTTCA 379 Query 100647 CCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCG 100706 | || || ||||| | |||| ||||| || |||| |||||| ||| | || | Sbjct 378 CAACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAGCTCGTAAGTTCTACCAG 319 Query 100707 TTTGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTG 100765 | | ||| | |||| |||| ||| || |||||||||| | | || |||| Sbjct 318 TCT-CAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCATGA----GCTGAACGTA 264 Query 100766 TCGGCGTCGCGCTCCCCGTTGCCAA-GAG-TC-GGGTTGGCGCCTTTGCCGCCCGGAAAC 100822 | | || | || ||| ||| || ||||| |||||||||||||| || ||| Sbjct 263 TA--CATCTCCGTCTTTAGGACCACCGAGGTCAGGGTTAGCGCCTTTGCCGCCAGGGAAC 206 Query 100823 TCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAG 100882 ||||||||||| || || || || || |||||||| || | || || || || ||| Sbjct 205 TCCCAGTCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGAAGTCTTTCACGGAG 146 Query 100883 TCCACAAA-----CACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAACGGGTCGGACA 100937 | || || ||||| ||||| |||| | ||| |||| || |||| || Sbjct 145 GCAACGAAACGATCACGCTTGGTTTT-----ATCGGTGAAGAAGAAGAAGGGATCGGCCA 91 Query 100938 ACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCA 100997 | |||||||| || || || || | || || | | | ||| || | || | || Sbjct 90 ATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGCCAGTATTCGCTTGTTTCAACTGCA 31 Query 100998 TTAGCTGACCGAAATTGCCCTTGTACGGCT 101027 | ||||| ||||| || || ||||| |||| Sbjct 30 TCAGCTGCCCGAAGTTACCTTTGTAGGGCT 1 >seq608441 Length=509 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || || || || |||||||| | | ||| |||| || || ||||| || Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCA 445 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| |||| ||||||||| || | |||||||||||| |||||| |||| Sbjct 444 GCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTT 385 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||||| ||||| || ||| | || ||||||||||| || | ||| Sbjct 384 ACATTTTCTATGGTATC-AGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGT 326 Query 19024 TTTGACAAAAATTTGCAT 19041 ||| |||||||| ||||| Sbjct 325 TTTAACAAAAATCTGCAT 308 >seq617918 Length=543 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 25235 AAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTCCCA 25294 ||| || || || || ||||| | |||| ||| ||| |||||||||||| | |||| Sbjct 473 AAAGGGACACTGGGGGGCCCACCTCCGATGGTCGGCAGCAGGGTCGTCGCCCTCGACCCA 414 Query 25295 GCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTAGTA 25354 | ||| || || || || || || || |||| || ||||||||||| || | |||||| Sbjct 413 CCTCATGATTTCTACCTTACAGAAAGCACAGCAAACCTCGTCGCCGCGACCGAGGTAGTA 354 Query 25355 GAACCCATTGGCGGCCATTTG 25375 ||| || ||| ||||| ||| Sbjct 353 GAATCCGTTGCGGGCCAATTG 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411172835738722