Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq51755 284 1e-71 seq255931 105 6e-18 >seq51755 Length=2487 Score = 284 bits (314), Expect = 1e-71 Identities = 651/969 (67%), Gaps = 27/969 (3%) Strand=Plus/Minus Query 101017 ATAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA 101076 |||||| || |||||||| | |||||| || | || || || |||| || ||||| Sbjct 1947 ATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAA 1888 Query 101077 ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCC 101136 |||| | | ||| | || |||||||| || || |||||||| ||||| || Sbjct 1887 CGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACC 1828 Query 101137 CACAATAA---TTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGATTTAACAGCGTAATC 101193 |||| | ||||| |||| || || ||| || || | | | | || | || Sbjct 1827 GACAACCAGCTTTTTGGGCGGA---ACACCTTGGGTCAGCAGATACCTGATACCGAAGTC 1771 Query 101194 CGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAG 101253 ||| |||| || ||||| ||||| ||| ||||| || | || |||| || || Sbjct 1770 GGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAG 1711 Query 101254 ATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAA 101313 | | ||| ||||| || || ||||| ||||| ||||||| || || | ||| | | | Sbjct 1710 AGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTA 1651 Query 101314 CTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACT 101373 ||| || || | ||| || || || || ||||| ||| | ||| || ||| Sbjct 1650 CTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGA 1591 Query 101374 TGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCAATT 101432 || | ||||| ||| | || || | ||| || | ||| |||| |||| || |||| Sbjct 1590 GGTCAGCTCGTAAGTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTAATT 1532 Query 101433 CTTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCC---GAGTGTTGGGT 101489 |||||| | | || |||| | | || | ||||| || ||| |||| Sbjct 1531 CTTTCATGA----GCTGAACGTATA--CATCTCCGTCTTTAGGACCACCGAGGTCAGGGT 1478 Query 101490 TGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAA 101549 | |||||||| || || || ||||||||||| || || || || || || || ||||| Sbjct 1477 TAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGG 1418 Query 101550 CCTGCAAAAATTCTTTGACAGAATCCAC-AAACA--CACGCC--GTTTTATCGCGTCGTG 101604 || | || ||||| || || | || |||| ||||| ||||||||| ||| Sbjct 1417 TTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCG----GTG 1362 Query 101605 CATATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTG 101664 | | | |||| || |||| |||||||||||| || || || || || || || | Sbjct 1361 AAGAAGA-AGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACC 1303 Query 101665 TGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCA 101724 | ||| || ||| | ||| ||||| || ||||| |||||||||||||||||||| Sbjct 1302 AGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCA 1243 Query 101725 AGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTT 101784 | |||| || || || || || || | || ||||| ||||||||||||| ||| || Sbjct 1242 GGACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTT 1183 Query 101785 AAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTT 101844 || ||| |||||| ||| ||||| ||||| |||| |||||| || || ||| Sbjct 1182 GAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTT 1123 Query 101845 GAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGA 101904 | ||| || | |||||| || |||||||| || ||||| ||||| | |||||| | Sbjct 1122 CAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGT 1063 Query 101905 GAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTAC 101964 ||||| || | ||| | |||||| || || || | | ||||||||||||||| || Sbjct 1062 CAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGAC 1003 Query 101965 AAAATACGC 101973 || || || Sbjct 1002 GAAGTAGGC 994 >seq255931 Length=537 Score = 105 bits (116), Expect = 6e-18 Identities = 341/520 (66%), Gaps = 21/520 (4%) Strand=Plus/Minus Query 101207 TCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGAC 101266 || ||||| ||||| ||| ||||| || | || || | || ||| | ||| ||| Sbjct 508 TCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGTCCGAGAGTGTCGTTAGAC 449 Query 101267 CACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGA 101326 || || || ||||| ||||| ||||||| || || | || | | |||| || || Sbjct 448 CAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCATGTACTTCTGGGCTTCC 389 Query 101327 TCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTAT 101386 | ||| || || || || ||||| ||| | || || ||| || | ||||| Sbjct 388 TTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAGCTCGTAA 329 Query 101387 GTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAAT 101445 ||| | || || | ||| || | ||| |||| |||| || ||||| |||| | Sbjct 328 GTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCATGA---- 274 Query 101446 GTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCC---GAGTGTTGGGTTGGCGCCTTTACC 101502 | || |||| | | || | ||||| || ||| ||||| |||||||| || Sbjct 273 GCTGAACGTATA--CATCTCCGTCTTTAGGACCACCGAGGTCAGGGTTAGCGCCTTTGCC 216 Query 101503 ACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTC 101562 || || |||||||| || || || || || || || || ||||| || | || || Sbjct 215 GCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGAAGTC 156 Query 101563 TTTGACAGAATCCAC-AAACA--CACGCC--GTTTTATCGCGTCGTGCATATAATAGAAC 101617 ||| || || | || |||| ||||| ||||||||| ||| | | | |||| Sbjct 155 TTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCG----GTGAAGAAGA-AGAAG 101 Query 101618 GGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAAT 101677 || |||| |||||||||||| || || || || || || || | | | ||| || | Sbjct 100 GGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGCCAGTATTCGCTTGT 41 Query 101678 TTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCT 101717 || | ||| ||||| || ||||| ||||||||||||| Sbjct 40 TTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416146112006553