Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq26808 181 2e-40 seq608441 170 4e-37 seq10425 102 2e-16 seq562919 100 6e-16 seq525368 100 6e-16 seq219547 98.7 2e-15 seq601675 96.9 8e-15 >seq26808 Length=8541 Score = 181 bits (200), Expect = 2e-40 Identities = 183/237 (77%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 104329 TATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 |||| || ||||| || || | |||| ||| | ||| ||||||||||| |||||||||| Sbjct 7613 TATTACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGT 7554 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 | || ||||| | || ||||||| |||||| || ||||| || || | ||||| || | Sbjct 7553 CTGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTG 7494 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || ||||| || || ||||| || ||||| |||||||| | || ||| || || Sbjct 7493 GCGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTT 7434 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 | ||||| | |||||| ||||| || ||||| ||||| || |||||||||||| ||| Sbjct 7433 CCACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGTGT 7377 >seq608441 Length=509 Score = 170 bits (188), Expect = 4e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || || || |||| || | |||||||| |||||||| ||| Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCA 445 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| ||||| || || ||||| || ||||| ||||||||| Sbjct 444 GCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTT 385 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| |||||| | ||| || |||| ||| || || |||||||| || ||| Sbjct 384 ACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTT 325 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 324 TTAACAAAAATCTGCAT 308 >seq10425 Length=666 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 ||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||| || | Sbjct 457 CCTCTGTTGATTGGGAGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCTCGAT 398 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||| || || ||||| || || || ||||| || || || || ||||| || || Sbjct 397 GGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAAT 338 Query 104554 CTGCATTTT 104562 ||||| || Sbjct 337 TTGCATCTT 329 >seq562919 Length=404 Score = 100 bits (110), Expect = 6e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 269068 CTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTA 269124 |||||| | || ||| |||| |||||||| | ||||| || | | | || | | Sbjct 63 CTGTGTAAAGAAGAAAGCTGATTGGGCTCTACAGTGGATCGCAAGCAAGACTGCAACATT 122 Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGC 269184 || ||||| | ||||| ||||| ||||||||||| ||||| || ||||| |||||| Sbjct 123 TGGTGAAAGAATTGTTGCCTTTGCAGCTGTAGAAGGAATATTTTTCTCGGGCAGTTTTGC 182 Query 269185 CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATT 269244 | ||||| ||| |||| || || || |||||||||||| | || ||| ||| || | Sbjct 183 TTCCATCTTCTGGCTGAAAAAGAGGGGTCTTATGCCAGGACTCACATTCAGTAATGAGCT 242 Query 269245 GATAAGCAGGGACGAAGGTTT 269265 || |||||| | |||||| Sbjct 243 TATTTCCAGGGATG-AGGTTT 262 >seq525368 Length=351 Score = 100 bits (110), Expect = 6e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 238575 GAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATG 238634 |||||||| ||| | |||||||| || ||| ||||| | || | | ||||||||| Sbjct 43 GAAACTCATGATGATTTGTGGAATTCGGCTCAGCTACAACTTGTTAAAGAGGGCAAAATG 102 Query 238635 CATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAG 238694 ||| | || ||| ||||||||||| ||| || ||| | ||||||||| |||| || Sbjct 103 CATGGCTTTTTAAGAATGTATTGGTGTAAGAAAATATTGGAATGGACTGCTACTCCGGAG 162 Query 238695 GAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCT 238754 || ||||||| ||| || ||| |||||||| | ||| |||| || | ||||| Sbjct 163 GATGCTCTTAAGTATGCAATATATTTGAACGATCATTACAGTATCGATGGGAGAGATCCA 222 Query 238755 AACGGATACGTAGGT 238769 | |||| || ||| Sbjct 223 AGTGGATTTGTGGGT 237 >seq219547 Length=1641 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 ||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||| || | Sbjct 1197 CCTCTGTTGATTGGGAGGGATTCCCTCTTTGTCTTGAATCTTAGCTTTCACATTCTCGAT 1256 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||| || || ||||| || || || ||||| || || || || ||||| || || Sbjct 1257 GGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAAT 1316 Query 104554 CTGCATTTT 104562 ||||| || Sbjct 1317 TTGCATCTT 1325 >seq601675 Length=487 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 268851 ATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGT 268910 || ||||||| || ||||| | | || || || || || ||||| |||| |||| | Sbjct 207 ATGTTCTTGCATTCTTTGCGGCTTCCGACGGCATTGTAAATGAAAACTTAGTTGAGAGAT 266 Query 268911 TCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAG 268970 | | ||||| || || | |||| || |||||||| || || ||||||||||| || | Sbjct 267 TTTCACAAGAAGTTCAAGTGACTGAGGCAAGATGTTTCTATGGCTTCCAGATAGCCATGG 326 Query 268971 AAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT-AGATGATAACAAC 269029 ||||| ||||||| || ||||| || | |||||||| || || ||| ||| || Sbjct 327 AAAATGTTCATTCTGAAATGTATTCCCTTCTTATAGATACATACATCAGA-GATCCAAAG 385 Query 269030 GAAAAGAAAAGACTATTTTCTT 269051 || | | ||||| ||||| || Sbjct 386 GAGAGGTAAAGAAAATTTTATT 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1141471390933404