Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq90465 131 9e-26 seq284168 122 5e-23 seq132396 114 7e-21 seq120250 114 7e-21 seq31443 114 7e-21 seq181653 89.7 3e-13 seq31460 89.7 3e-13 seq31101 89.7 3e-13 seq603608 87.8 9e-13 seq666794 84.2 1e-11 seq116612 84.2 1e-11 seq20091 82.4 4e-11 >seq90465 Length=1789 Score = 131 bits (144), Expect = 9e-26 Identities = 88/99 (89%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| || |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 838 AATAAAAAATAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 779 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 |||||||| ||||||||||||||||||||| || || || Sbjct 778 GACGCTCTAACCAACTGAGCTAATGGGCCGACGGCGTTT 740 >seq284168 Length=884 Score = 122 bits (134), Expect = 5e-23 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 372 AAAAAATAATCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 431 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||| ||||||||||||||||||||| ||| Sbjct 432 GCTCTAACCAACTGAGCTAATGGGCCGACGA 462 >seq132396 Length=984 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 628 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 687 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 688 TGAGCTAATGGGCCG 702 >seq120250 Length=570 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 175 AAAAAATCG---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 231 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 232 GCTCTAACCAACTGAGCTAATGGGCC 257 >seq31443 Length=800 Score = 114 bits (126), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| | Sbjct 508 AAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAA 567 Query 11511 CCAACTGAGCTAATGGGCCGTCGACGA 11537 ||||||||||||||||||| ||| || Sbjct 568 CCAACTGAGCTAATGGGCCTCCGATGA 594 >seq181653 Length=474 Score = 89.7 bits (98), Expect = 3e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 51 >seq31460 Length=336 Score = 89.7 bits (98), Expect = 3e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTCCGAC 56 >seq31101 Length=1043 Score = 89.7 bits (98), Expect = 3e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1039 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 989 >seq603608 Length=495 Score = 87.8 bits (96), Expect = 9e-13 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 54 >seq666794 Length=1215 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| || ||||||| |||| |||||||||||||||||||||||| ||| | Sbjct 935 TGGCCTATGTGGGGTTCGAACCCACGACTTTCGCGTTATTAGCACGACGCTCTAACCCCC 994 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 995 TGAGCTAATAGGCCG 1009 >seq116612 Length=1939 Score = 84.2 bits (92), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| | | || ||| |||| |||||| ||| || ||||||| ||||||||| Sbjct 1667 AAATATGGTAAAAAACAAACATCA--TTGGCCTATGCGAGCATCGAACTCACGACCTTCG 1610 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||| | ||| ||| ||||| ||||||||||||||| ||||| Sbjct 1609 CGTTGTAAGCGCGATGCTCTAACCAACTGAGCTAATAGGCCG 1568 >seq20091 Length=1260 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 530 AAAAATAAAGTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 589 Query 11504 GCTCT 11508 ||||| Sbjct 590 GCTCT 594 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 259346677410388