Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq237220 527 8e-145 seq562919 131 2e-25 seq601675 100 4e-16 seq61515 84.2 3e-11 >seq237220 Length=3575 Score = 527 bits (584), Expect = 8e-145 Identities = 1175/1752 (67%), Gaps = 30/1752 (2%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| || || | ||| ||||| || ||||||| ||| | ||||| |||||| Sbjct 2441 GCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAAAAA 2382 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || ||| |||| || ||| |||| || || | ||| ||||| | |||||||||| Sbjct 2381 TGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACATGTATATTAAAAGATTGACTT 2322 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || ||||| | || |||||||||| ||| | || || || ||||||| Sbjct 2321 TGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAAATTTCC 2262 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGA 62251 |||| || ||||| || || | || | ||| || | || |||| || || || Sbjct 2261 CAAACTGTCTTATATAAGTCTCGTATT-TCTGTAGGTATACTTTCGATATTTTGTATAGA 2203 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| || ||||| ||| || || || |||| |||||| | | || || | Sbjct 2202 TCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATCCCATAAATCTGCTTCTGTCAG 2143 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGT 62368 | | | ||| | ||| |||| || ||||||||||||||||| || || ||| || Sbjct 2142 ATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGA-- 2085 Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428 ||||||||| || | ||||| | || ||||||||||| ||||| || || ||||| Sbjct 2084 -TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGA 2026 Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 62486 ||||| ||||| ||||| | ||| | | ||| | ||| || ||| | | || || Sbjct 2025 GGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCC--ATGCTTAGCAATGTTT 1968 Query 62487 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62546 | ||||| || ||| | ||| | ||| | || ||| Sbjct 1967 TTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGATTTTTATTCCACATTTCGTACTGT 1908 Query 62547 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606 | ||||| ||| || ||| | ||||| ||||| ||| | ||| || ||| Sbjct 1907 AATATACCTAGACTTGCAGGGCTCCCTTCGTATGTTTCGTACACTCCATACTTTTCTGCT 1848 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62666 | ||||||||| || |||||||| || || ||||| ||||| || || | | |||||| Sbjct 1847 AATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTAGT 1788 Query 62667 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62726 | ||||| | || || | || || | | |||||| || || || | ||| Sbjct 1787 TTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGACCT 1728 Query 62727 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62786 |||||||| || || ||||||| ||| || ||| || ||| ||||| |||| |||| Sbjct 1727 TGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGA 1668 Query 62787 TAATAATTAATATCTATAATTTTATTGAGATTT-CTG--ACAATTACTTTGACCACATCC 62843 |||||||| | || || |||||||| | |||| ||| ||| || || || || Sbjct 1667 TAATAATTTACGTCAATGATTTTATTCAAATTTTCTGTTACAGTT---TTAGTAACTTCT 1611 Query 62844 TTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTACAAACATGTTCAAGGCAACAGAT 62900 || | ||| ||||| | || ||| | |||||||| || | ||||| ||| Sbjct 1610 TTTAATTTCGCAAAATTATATGTTTTGTTATCATTAACAAACATATTTAGGGCAATAGAA 1551 Query 62901 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62960 || | || || || || || |||| | || | | ||| || ||| |||||||| || Sbjct 1550 GCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAGG 1491 Query 62961 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63020 |||||||| || || || |||||||||| |||||||| ||| | ||||| | ||| ||| Sbjct 1490 TTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTA 1431 Query 63021 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63080 | | ||| ||||||||||||| || | |||| |||||| || |||||||| | ||| Sbjct 1430 AATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGTACT 1371 Query 63081 CGAGC-CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTC 63139 | || ||| || | | | |||| ||||| |||| || | ||| || ||| Sbjct 1370 TGTGCTCTTACTTGTTTA-ATAAATCTATTTTCTTTTTCATAGGTTTCATATAAGGATTC 1312 Query 63140 GAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 63199 || || | ||||||| | | || ||||| || || | |||||||| | | ||| Sbjct 1311 AAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGGTCCA 1252 Query 63200 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 63259 | || |||| | |||| |||||| || |||||||| ||||| | || ||| || Sbjct 1251 TACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAG 1192 Query 63260 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63319 || |||| | ||| || ||||| || || || || | ||| | ||| | | || Sbjct 1191 TTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTTTCTTTAAATCTAAGAATTCAAATAT 1132 Query 63320 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63379 ||| | |||||| ||||| || || | || | | | ||||| || || || ||||| || Sbjct 1131 ATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTCCTTG 1072 Query 63380 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63439 ||| | |||||||| || ||||| ||||||| |||||||| | || ||| ||||| | Sbjct 1071 ATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGACAC 1012 Query 63440 ACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT--AATTGATAGACCT 63497 |||||| || || | ||||| | || | || | ||| | | | || | ||| Sbjct 1011 ACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATA-CAGTGGACATG-GACACCA 954 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 ||||| ||||| |||||| || || || || | ||||| || || || || || ||| Sbjct 953 ATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATCCCTTCT 894 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||||||||||| |||| | ||||||||| || | || | || |||| | Sbjct 893 ATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGCA 834 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 || ||||||||||| || || || || |||| |||||||||| ||| || || Sbjct 833 GCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAATTATATGTA 774 Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 | || |||| || ||||| ||||||||| | | || | ||| ||||| || Sbjct 773 TTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGACACTCTCATCAACATATGT 714 Query 63738 TGAGGTCTTTCA 63749 ||||||| |||| Sbjct 713 TGAGGTCGTTCA 702 >seq562919 Length=404 Score = 131 bits (144), Expect = 2e-25 Identities = 147/196 (75%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || |||||||| ||||| || || | |||||| ||||| || |||||||| || || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474 || || || ||||||||||| || |||||||||| || ||| || || || | || | Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACC--AAATGTTGCAG 113 Query 33475 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 || || ||||||| | |||||||||| || ||||| |||||||| || | |||| Sbjct 112 TCTTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTT 53 Query 33530 CTATGGCATTAAAGAG 33545 | ||||||||||| || Sbjct 52 CAATGGCATTAAACAG 37 >seq601675 Length=487 Score = 100 bits (110), Expect = 4e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || ||||| || | ||| ||||||||| ||||||| ||||| ||||| ||||| || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 || ||||||||||| ||||| || | || |||||| |||||| || | || ||| Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 ||||| || || ||||| || ||||| || || | ||||| || || || Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAA 197 >seq61515 Length=491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 63964 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 64023 ||||||||||||| || |||| ||||||| || | |||||||| |||| ||||||| Sbjct 412 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 353 Query 64024 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64083 | ||||| | ||||| || || || | || || || ||| | || | || || | Sbjct 352 CTGGATGATCAGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 293 Query 64084 TTGTTACTCCATTATATATTCCTTGAATAACCTT 64117 ||||||||||| || ||||| | ||||| || Sbjct 292 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617707334135080