Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq51755 318 6e-82 seq237220 206 3e-48 seq255931 141 9e-29 seq26808 100 3e-16 >seq51755 Length=2487 Score = 318 bits (352), Expect = 6e-82 Identities = 810/1214 (67%), Gaps = 24/1214 (2%) Strand=Plus/Plus Query 62039 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGAT 62098 ||||| || | ||| || || |||||||||||||| ||||||||||| || || || || Sbjct 982 AAAGTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGAC 1041 Query 62099 CGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGGC 62158 || | || ||| || || | ||| | || || || || || || || || || || Sbjct 1042 CGCATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGT 1101 Query 62159 GACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCG 62218 || ||||| || |||||| | || || || |||||| |||| | ||||| || Sbjct 1102 GATGGCATCAATGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCA 1161 Query 62219 TGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAAA 62278 || || || || ||||| || || || || || || || ||||| ||| | ||||| Sbjct 1162 TGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAG 1221 Query 62279 CCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGATG 62338 || ||||| | || | | |||||||| || ||||||||||| || || || |||| Sbjct 1222 CCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGAT- 1280 Query 62339 GCAG-CCAAACTGGCGAATCCTCACATTAAAG-TGTTACCTTCGATAGGCGGCTGGACAT 62396 |||| |||| |||||| || |||||| | ||||||||||| || |||||||||| Sbjct 1281 GCAGTTGAAACAAGCGAATACT-GGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACAT 1339 Query 62397 TATCCGATCCGTTCTTTTATTTTCA-CGATGTGGCCAAACGCAAGATTTTTGTCGATTCC 62455 | ||||||| ||||| | | |||| |||| |||| || | ||| || | ||| Sbjct 1340 TGGCCGATCCCTTCTTCT-TCTTCACCGATAAAACCAAGCGTGACCGTTTCGTTGGCTCC 1398 Query 62456 GTCATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAGTTT 62515 || | ||| || | || |||||||| || |||||||||||||| || ||||||||||| Sbjct 1399 GTGAAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTC 1458 Query 62516 CCCGGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACGTAC 62575 || ||||| |||||||| || || || | || | ||| | || || || | ||| Sbjct 1459 CCTGGCGGCAAAGGCGCTAACCCTGACCTCGGTG--GTCCTA-AAGA-CG-GAGATGTAT 1513 Query 62576 ACGAT--TCTGTTGAGAGATTTACGCGAAGCCCTCGACCGTCTCTCAATCGAAACGAATC 62633 ||| | || ||| ||| ||||| || | || || | || || | Sbjct 1514 ACGTTCAGCTCATGAAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACTGGTA 1573 Query 62634 GAACGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAGTCGATT 62693 |||| ||||| |||| || ||||| ||||| ||||| || || || | | Sbjct 1574 GAACTTACGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACT 1633 Query 62694 ACACTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCAAAGGAG 62753 ||| ||||| || || || ||||| ||||||| | |||| ||||| ||||| || | Sbjct 1634 ACAAGGAAGCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGGTG 1693 Query 62754 CTTGGTCGAATAGCGATTTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTAACCCTA 62813 | ||||| || | | | ||| |||| || |||| ||||| || || | | || | Sbjct 1694 CCTGGTCTAACGACACTCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCAA 1753 Query 62814 AAGAGCATTATACGACCGATTTTGCCGTTCGTGCTATGCTCAAGCAAAAAGTCGAAAACA 62873 | || ||| || ||||| || | | | | |||| | ||| || || Sbjct 1754 AGGAAACTTACACCACCGACTTCGGTATCAGGTATCTGCTGACCCAAGGTGTTCCGCCCA 1813 Query 62874 AAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGTCGGTGACTTTG 62933 ||||| | | ||||| || || |||||||| || || ||||| || || ||||| Sbjct 1814 AAAAGCTGGTTGTCGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGTTCATGACTACA 1873 Query 62934 TCGACGAAAATAATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTACCTGGGAGG 62993 |||| | ||| || || |||| ||||| || || | || || || ||| ||| Sbjct 1874 ATGACG-ACATA--CCGTTCACCGGAGTAGCTAATGGCCCAGTTAAGGGAACTTGGCAGG 1930 Query 62994 ACGGAGTCGTCGATTATAGAGAGATTTTTAAT----TCTTTTGTGGGTAAAGACGGCATT 63049 |||| || || |||||||| ||||| ||| || || || || | |||| | Sbjct 1931 ACGGCGTGGTGGATTATAGGGAGATCACGAATGGCATCACTTCAGG---AACATGGCAGT 1987 Query 63050 AATCGTTACGATTCCATCGCAAAAGCGGCATACGTCTTTAATAACGCGACCGGCGATCTC 63109 | | ||| ||| || | |||| | ||||| | ||| | |||||||| || Sbjct 1988 ACT-ATTATGATAAAATATCCCAAGCTCCGTACGTGTGGAATCCTACCACCGGCGACCTG 2046 Query 63110 ATAACCTACGACAGTCCTCAGTCGGTTCTGGATAAAGCAAAATATGTTTTGGACTATAAT 63169 | ||||| || | | ||||||| | || || | ||||| || | || |||| Sbjct 2047 GTGACCTATGATGATGCAAGGTCGGTTATTGAGAAGGGGAAATACGTGAGGAACAATAAG 2106 Query 63170 CTGGGTGGTCTGTTCGCGTGGGAGATCGATGCTGACAACGGATTGCTTCTAAACGCAATG 63229 || ||||| |||||||| ||||| || || |||||||| || | |||||||||||| Sbjct 2107 CTTGGTGGACTGTTCGCTTGGGAAATAGACGCTGACAATGGGGATATCCTAAACGCAATG 2166 Query 63230 AACAGCGGTCTCGG 63243 || | ||||| || Sbjct 2167 AATATGGGTCTAGG 2180 >seq237220 Length=3575 Score = 206 bits (228), Expect = 3e-48 Identities = 844/1306 (65%), Gaps = 52/1306 (4%) Strand=Plus/Minus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || || || || || | || || || ||||| |||| |||||| ||||| || |||||| Sbjct 2465 ACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTT 2406 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTA--TAGGTTGGATTGG 147231 |||||| ||| ||| ||||| ||||| || | ||| ||| || | || | | Sbjct 2405 AAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAA--CTTCCCGTAATTCGGCTCAG 2348 Query 147232 CCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGT 147291 | ||| | ||| | ||||| || ||||| || ||| ||| || || || ||||| | Sbjct 2347 CAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCATTT 2288 Query 147292 CCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGT- 147350 | | ||| | |||||||||| | ||||| | | | || | || ||| Sbjct 2287 GTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAA-GTCTCGTATTTCTGTA 2229 Query 147351 GGAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATT---TTTATCATGATA 147407 || || || |||||||||| |||||| || || | ||||| ||| |||| Sbjct 2228 GGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCATTTCC 2169 Query 147408 TCTGTCGAATATACGTTGGTGTCTACGAGTTTATCGACG-AGATGCTGATTGACCACTTG 147466 || || ||| | | | ||| || | | ||| | | ||| ||||| || ||||| Sbjct 2168 TCA-TCCCATAAATCT--GCTTCTGTCAGATCA-CGAAGCAAATGGTGATTTACAACTTG 2113 Query 147467 ATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACTC 147526 | | || || || | ||| | || | || | |||| ||| || || || || || || Sbjct 2112 AAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGATTC 2053 Query 147527 GTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAATT 147586 || || |||| |||||| || || | || || ||||| || ||||| | ||||| Sbjct 2052 ATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAATT 1993 Query 147587 GCGTAAGCCGTGCATAGCCAT-TTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCA-TTC 147644 ||| | ||| ||| |||| || || | |||| |||| ||| ||| | ||| || Sbjct 1992 GCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCC-AGTCCCATAAATCTGTTG 1934 Query 147645 GATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCG 147704 |||| || ||||||||| || ||||||| | || |||||||||||| || ||| Sbjct 1933 GATT--TT--TATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCG 1878 Query 147705 TAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTTAGTGCACCATAA 147764 || | ||||| ||| | | || |||| ||| |||| || ||| ||||| Sbjct 1877 TATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAG 1818 Query 147765 TAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAGGGCATA 147824 ||||||||||| | || | || ||||| | |||| ||| | || ||||| || | | Sbjct 1817 TAAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAA 1758 Query 147825 TCC---AAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGT 147881 | ||||| || | ||| ||||| ||||||| ||| || || || ||||| || Sbjct 1757 CGCATTAAAAT---AAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGC 1701 Query 147882 CTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATTG 147941 || ||||| ||| || || | | |||||| |||| | ||| || |||||||| Sbjct 1700 CTAAAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTC 1641 Query 147942 AGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCG-AAGCTTTTAAA 148000 | ||| | || || | ||| || || | |||| ||| || || || Sbjct 1640 AAATTTTCTGTTACAGTTTTAG-TAACTTCT-------TTTAATTTCGCAAAATTATA-- 1591 Query 148001 CTGTTT-------ATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCG 148053 ||||| ||| |||| |||||| |||||| || || ||||| || || ||| Sbjct 1590 -TGTTTTGTTATCATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCA 1532 Query 148054 TTTCTCGATTGTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTC 148113 ||| || || ||| || ||||| | ||||| || || | ||| | Sbjct 1531 CTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTAC 1472 Query 148114 CCTCGtttttttGATTATTTTTATTGTTAACGTG-ATCTTTAAACATCATGTATGGAGCT 148172 | ||||| |||||| |||| | || || || ||||||||| | ||||||||||| Sbjct 1471 CTAAATTTTTCTGATTACTTTTTCTATT-ACATGAATCTTTAAATAACATGTATGGAGTA 1413 Query 148173 CCGGTCTCGACTTGAGTCTCAATAATT--TTTCTATGAAGATCTAAAGCCGAAATTTGTT 148230 || ||||| ||||||| || || ||| |||| | ||| || || | ||||| Sbjct 1412 CCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCA--AAGTACTTGTGCTCTTACTTGTT 1355 Query 148231 TTTTAAACTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGC 148290 | |||| | ||| || || |||| || | | || ||||||| || | | Sbjct 1354 TAATAAATCTATTTTCTTTTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCCCAAC 1295 Query 148291 AATCGTTTAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTA 148350 | || ||| || || || |||| || ||||| | | |||| || | | | | Sbjct 1294 AGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGGTCCATACGCCATCATTTTCAA 1235 Query 148351 CCCTCTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATC 148396 | || ||||| || ||||||||| |||||| ||| ||| ||| || Sbjct 1234 CTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAGTTC 1189 >seq255931 Length=537 Score = 141 bits (156), Expect = 9e-29 Identities = 359/532 (67%), Gaps = 13/532 (2%) Strand=Plus/Plus Query 62309 CCATACAAAGGTAATTTTGGTCAATTGATGGCAG-CCAAACTGGCGAATCCTCACATTAA 62367 || ||||||||||| || || || |||| |||| |||| |||||| || | |||| Sbjct 3 CCCTACAAAGGTAACTTCGGGCAGCTGAT-GCAGTTGAAACAAGCGAATACTGGC-TTAA 60 Query 62368 AG-TGTTACCTTCGATAGGCGGCTGGACATTATCCGATCCGTTCTTTTATTTTCA-CGAT 62425 || | ||||||||||| || ||||||||||| ||||||| ||||| | | |||| |||| Sbjct 61 AGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCTTCT-TCTTCACCGAT 119 Query 62426 GTGGCCAAACGCAAGATTTTTGTCGATTCCGTCATAGAATTTTTACAGACCTGGAAATTT 62485 |||| || | ||| || | ||||| | ||| || | || |||||||| || Sbjct 120 AAAACCAAGCGTGATCGTTTCGTTGCCTCCGTGAAAGACTTCCTCCAAACCTGGAAGTTC 179 Query 62486 TTCGATGGTGTCGACATCGATTGGGAGTTTCCCGGCGGGAAAGGCGCCAATCCCAACGTA 62545 |||||||||||||| || || |||||||| || ||||| |||||||| || || || | Sbjct 180 TTCGATGGTGTCGATATTGACTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCCTGACCTC 239 Query 62546 GGCGACGTCGAACGCGATCGCGAAACGTACACGAT--TCTGTTGAGAGATTTACGCGAAG 62603 || | ||| | || || || | ||| ||| | || ||| || ||||| || Sbjct 240 GGTG--GTCCTA-AAGA-CG-GAGATGTATACGTTCAGCTCATGAAGGAATTACGTCAAA 294 Query 62604 CCCTCGACCGTCTCTCAATCGAAACGAATCGAACGTACGAATTGACTAGCGCGATCAGCG 62663 | || || | || || | |||| ||||| |||| || ||||||| Sbjct 295 TGTTGGATGAGCTGGCGGCTGAGACTGGTAGAACTTACGAGCTGACCTCTGCCATCAGCG 354 Query 62664 CCGGCGATGACAAAATTGCCGTAGTCGATTACACTGAAGCGCAAAAATATTTGGATTATA 62723 |||| ||||| || || || | |||| ||||| || || || |||| ||| Sbjct 355 CCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGAAGCCCAGAAGTACATGGACCATA 414 Query 62724 tttttttAATGACATACGATTTCAAAGGAGCTTGGTCGAATAGCGATTTGGGATATCAAA 62783 |||| | |||| ||||| ||||| || || ||||| || | | | ||| | || | Sbjct 415 TTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTCTAACGACACTCTCGGACACCAGA 474 Query 62784 CGACTCTGTACGCGCCTTCGTTTAACCCTAAAGAGCATTATACGACCGATTT 62835 | |||||||||| || || | | || || || ||| || ||||| || Sbjct 475 CCGCTCTGTACGCTCCGTCTTGGAGTCCAAAGGAAACTTACACCACCGACTT 526 >seq26808 Length=8541 Score = 100 bits (110), Expect = 3e-16 Identities = 172/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 26754 TTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATC 26813 ||||||| |||| |||||| | || || ||||| | || || || | || || | Sbjct 7369 TTTTAGT--AACACAATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTG 7426 Query 26814 GAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGG 26873 || | ||| | |||||| ||||| | |||||| || ||| ||||| ||||| Sbjct 7427 GAGGTGGAAGCTTCCGACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGT 7486 Query 26874 ATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC 26933 || || || || |||||| | ||||| | | ||| |||||| | ||||||| | | Sbjct 7487 ATTCCGCCAGACCAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACT 7546 Query 26934 GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGA 26993 | |||||||| || || |||||||| || | ||| | || |||||||||||||| Sbjct 7547 CTTTCAGACTATAATATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGA 7606 Query 26994 GGAAAAATA 27002 || || ||| Sbjct 7607 GGTAATATA 7615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474636173105360