Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq51755 255 5e-63 seq608441 95.1 1e-14 seq237220 87.8 2e-12 >seq51755 Length=2487 Score = 255 bits (282), Expect = 5e-63 Identities = 497/722 (69%), Gaps = 29/722 (4%) Strand=Plus/Plus Query 23642 CGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGT 23701 ||||||||| ||||| |||||||| ||||| ||| | || ||||| ||| | || || Sbjct 993 CGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGACCGCATCCCGGT 1052 Query 23702 GCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAA 23761 || || || | |||||||| ||||||||| | || || || || || || || || || Sbjct 1053 TCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGTGATGGCATCAA 1112 Query 23762 CGACGCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCCG 23821 ||| | | ||| | |||||||| | || |||||||||| ||| ||||| Sbjct 1113 TGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCATGCAGCGGCCG 1172 Query 23822 CGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGGG 23881 | ||||||||||| || ||||||||||| ||||| || || |||||||| || ||||| Sbjct 1173 TGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAGCCTCAAAAGGG 1232 Query 23882 AGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAACT 23941 | | ||| | ||||||||||| || || ||||| || ||| ||||| ||||| Sbjct 1233 ATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACA 1292 Query 23942 GGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGTT 24001 ||| || | || || | |||||||||| ||||||||||| || | ||||| || Sbjct 1293 AGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTT 1352 Query 24002 TTATCACATGCAC-----GAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAGAG 24056 | || | ||| | || ||||| |||| || | | ||| || |||| Sbjct 1353 CT-TCTTCTTCACCGATAAAACCAAGCGT-GACCGT---TTCGTTGGCTCCGTGAAAGAC 1407 Query 24057 TTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCGGC 24116 || | ||| ||||| ||||| || || ||||| ||||||||||||||||| |||||| Sbjct 1408 TTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCCTGGCGGC 1467 Query 24117 AAAGGGGCAAATCCCAACGTTGGCGATGCCGAACGTGATCGCGCCACGTACACCGCC--C 24174 ||||| || || || || | || | | || || | || | | ||| || | | Sbjct 1468 AAAGGCGCTAACCCTGACCTCGGTGGT-CCTAAAG---ACG-GAGATGTATACGTTCAGC 1522 Query 24175 TATTGTCAGAGTTGCGCGTCAGA--TTGGACGCGTTGGGCGTGCGCACAAACCGCTA--- 24229 | || ||| || ||||| | ||||| | | | |||| || | || | || Sbjct 1523 TCATGAAAGAATT--ACGTCAAATGTTGGATGAGCT-GGCG---GCTGAGACTGGTAGAA 1576 Query 24230 -TTACGCGCTCACCTCTGCCATAAGCGCGGGCAACGACAAGATAGCTGTCGTCAACTACA 24288 ||||| ||| ||||||||||| || || || |||||||| || || ||||||| Sbjct 1577 CTTACGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTACA 1636 Query 24289 CCGAAGCGCAAAAATATTTGGATACTATATTCTTGATGACGTACGACTTCAAAGGAGCCT 24348 ||||| || || || ||||| ||| ||| | |||| ||||||||||| || |||| Sbjct 1637 AGGAAGCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCCT 1696 Query 24349 GG 24350 || Sbjct 1697 GG 1698 >seq608441 Length=509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||| || || || |||||||||||| | || || ||| || || || || || Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCA 445 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TT 131156 ||| | || | |||||||| || ||||| || || |||||||| ||| ||| ||| || Sbjct 444 GCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTC-TTGAATTTTTGCTTT 386 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | ||||| | || |||| || | || | ||||||||| || ||||| Sbjct 385 TACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGT 326 Query 131217 TTTTACGAAAATCTGCATG 131235 ||| || |||||||||||| Sbjct 325 TTTAACAAAAATCTGCATG 307 >seq237220 Length=3575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 463/734 (63%), Gaps = 9/734 (1%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 ||||| || || ||||| || || | || ||||| | ||| | ||||| ||||| Sbjct 2126 TGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAA 2067 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 ||||||||||| || ||||| || | || || || || | || |||||||| || Sbjct 2066 GGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCT 2007 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | ||| | |||||||| ||||| ||||| |||| || |||| | | ||| ||| Sbjct 2006 ATCAAAAGAGAATTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCC 1947 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 |||| || || | | |||||| |||||||| || || || || || ||| Sbjct 1946 CATAAATCTGTTGGATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGG 1887 Query 145295 CTGCCTTGAAAGGAACTGTA-ACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAG 145353 || |||| | | ||| ||| || | ||| || | || ||||| || || | Sbjct 1886 CTCCCTTCGTATGTTTCGTACACT-CCATACTTTTCTGCTAATTCACAACTTGCTTCTAA 1828 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 || || | ||||| || || ||||| || || || ||||| || || Sbjct 1827 TGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTC 1768 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 ||| || | |||| | | ||||||||| || || || || | || | || || || Sbjct 1767 GTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGG 1708 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAAT 145533 ||||| | | ||| | | || | | |||||| ||| ||| || || Sbjct 1707 TCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGAT 1648 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593 ||||||||| ||| ||| || |||| | || || |||| | | | Sbjct 1647 TTTATTCAAATTTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATA--- 1591 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 | | || | | ||| | |||| | ||| || || || || || || |||||| Sbjct 1590 TGTTTTGTTATCATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCAC 1531 Query 145654 CTCCTCGGCGTCGCTGT--ATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTT 145711 || || | | ||| ||| ||| || || | ||||| || |||||||| ||||| Sbjct 1530 TTCATCATC--AGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTA 1473 Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771 || | ||||| |||||||||||| || || || | || || | | |||||| || Sbjct 1472 CCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTA 1413 Query 145772 CCAGTCTCCACCTG 145785 |||||||| || || Sbjct 1412 CCAGTCTCTACTTG 1399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468042505633920