Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq51755 255 5e-63 seq255931 132 4e-26 seq626934 82.4 6e-11 >seq51755 Length=2487 Score = 255 bits (282), Expect = 5e-63 Identities = 796/1204 (66%), Gaps = 55/1204 (5%) Strand=Plus/Minus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 |||||||| || || || | ||| ||||||||||||||||||||||| || |||| || Sbjct 2171 ATATTCATTGCGTTTAGGATATCCCCATTGTCAGCGTCTATTTCCCAAGCGAACAGTCCA 2112 Query 95889 CCTAACTTGTTTTGTTCCACA--TATCGACCTTTAGCTATAACAGAATCAACACTATCAT 95946 || | ||| || ||||| || ||| || || | ||||| || || ||||| Sbjct 2111 CCAAGCTTATT--GTTCCTCACGTATTTCCCCTTCTCAATAACCGACCTTGCATCATCAT 2054 Query 95947 ATGAAATTAAATCGCCTTTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCAA 96006 | | | | ||||| |||| || | ||||| | |||| | || || ||| Sbjct 2053 AGGTCACCAGGTCGCCGGTGGTAGGATTCCACACGTACGGAGCTTGGGATATTTTATCAT 1994 Query 96007 ATT--TAACAATATATTTGT----TTATTTCGTTTTTGATTTGGCGATAATCAACAACGC 96060 | | || || || | | || | || |||| | | |||||| || |||| Sbjct 1993 AATAGTACTGCCATGTTCCTGAAGTGATGCCATTCGTGATCTCCCTATAATCCACCACGC 1934 Query 96061 CATCTTCCCAAGTGCCCGAAACGGGCCCGTTA-CTACTTCCCAAAAAATAGT-TATCGTT 96118 | || | |||||| ||| ||| || || ||| ||||| || || || | |||| Sbjct 1933 CGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACT--CCGGTGAACGGTATGTCGTC 1876 Query 96119 TTCGTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAA--- 96174 | ||| | ||| ||||| |||||||| || |||||||| || || || |||| | Sbjct 1875 ATTGTAGTCATGA-ACTCCTGTCCAGCCACGTCCGTACATAGCAACACCGACAACCAGCT 1817 Query 96175 TTTTGCGCGGGTCCACGCCTTGATTTGTGAGCA-AT---TTA-ACGGCATGGTCCGTGTT 96229 ||||| |||| || ||||| || |||| || | | || | | ||| ||| | Sbjct 1816 TTTTGGGCGGA---ACACCTTGG---GTCAGCAGATACCTGATACCGAA--GTCGGTGGT 1765 Query 96230 GTACAGCTCGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAAT 96289 ||| || ||||| ||||| ||| ||||| || | || || | ||| | | Sbjct 1764 GTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAGTGTC 1705 Query 96290 GTTTGACCACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTG 96349 ||| ||||| || || || || ||||| ||||||| || || | || | | |||| || Sbjct 1704 GTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTACTTCTG 1645 Query 96350 CGCAACGTCGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAA 96409 || | | ||| || || || || ||||| ||||||||||| ||| |||| Sbjct 1644 GGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGGTCAG 1585 Query 96410 CTCGTACGTTTTGCCCGTTTGCAGTTG-CAACTCGTCTAACATCACGCGCAATTCCTTTA 96468 |||||| ||| | || || | ||| | || ||| || ||||| || |||| |||| Sbjct 1584 CTCGTAAGTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTAATT-CTTTC 1527 Query 96469 ATAGAATGTTGTACGTGTCAGCGTCGCGCTCTTT---GTTGCCGAGCGTC-GGGTTGGCG 96524 || || | || |||| | | || | ||||| ||||| ||| ||||| ||| Sbjct 1526 AT-GA--GCTGAACGTAT--ACATCTCCGTCTTTAGGACCACCGAG-GTCAGGGTTAGCG 1473 Query 96525 CCTTTACCGCCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGC 96584 ||||| ||||| || || ||||| || || || || || ||||| || ||||| || Sbjct 1472 CCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTGG 1413 Query 96585 AAAAATTCTCTGACGGAGTCTACAAA-----CACGCGCCGTTTTTCCGCGTCGTGCATGT 96639 | || ||| | |||||| | || || ||||| ||||| || ||| | | Sbjct 1412 AGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCG----GTG-AAGA 1358 Query 96640 AATAGAACGGGTCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGAT 96699 | |||| || |||| || ||||||||| || || || || | || || | | || Sbjct 1357 AGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTAT 1298 Query 96700 TAGCCAGTTTGGCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAG 96759 | || |||| | ||||| ||| || ||||| |||||||||||||||||||| | | Sbjct 1297 TCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACG 1238 Query 96760 ACACGCCCTTTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAAT 96819 | | |||||||| || || || | || ||||| || ||||| |||| ||| || || | Sbjct 1237 ATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGT 1178 Query 96820 CTGAACGGCCCTGGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGG 96879 || |||||| ||| || || |||| |||| |||||| || || ||| | Sbjct 1177 CTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAAC 1118 Query 96880 CATCGTTAAGGCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGT 96939 || || | ||| || || |||||||| || || || ||||| | |||||| | || || Sbjct 1117 TGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGT 1058 Query 96940 TGGGCAGCGGCACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAAT 96999 | || | ||| | |||||| || || || | | ||||||||||||||| || || | Sbjct 1057 TCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGT 998 Query 97000 ACGC 97003 | || Sbjct 997 AGGC 994 >seq255931 Length=537 Score = 132 bits (146), Expect = 4e-26 Identities = 357/537 (66%), Gaps = 23/537 (4%) Strand=Plus/Minus Query 96221 GTCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCC 96280 ||| ||| |||| || ||||| ||||| ||| |||||||| | || |||| ||| Sbjct 524 GTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGTCC 465 Query 96281 CAAATCAATGTTTGACCACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAG 96340 | | ||| ||||| || || || || ||||| ||||||| || || | ||| | Sbjct 464 GAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCAT 405 Query 96341 GAACTTTTGCGCAACGTCGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGC 96400 | |||| || || | | ||| || || || || ||||| ||||| ||||| || Sbjct 404 GTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGC 345 Query 96401 ACTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCTAACATCACGCGCA 96459 | |||| |||||| ||| | || || | ||| || | ||| || ||||| || | Sbjct 344 AGAGGTCAGCTCGTAAGTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTA 286 Query 96460 ATTCCTTTAATAGAATGTTGTACGTGTCAGCGTCGCGCTCTTTGTTGCC---GAGCGTC- 96515 ||||||| | || || |||| | | || | ||||| || ||| ||| Sbjct 285 ATTCCTTCATGAGC----TGAACGTATA--CATCTCCGTCTTTAGGACCACCGAG-GTCA 233 Query 96516 GGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTC 96575 ||||| |||||||| ||||| || || |||||||| || || || || ||||| || ||| Sbjct 232 GGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTC 173 Query 96576 CAAACCTGCAAAAATTCTCTGACGGAGTCTACAAA-----CACGCGCCGTTTTTCCGCGT 96630 || || | || ||| | |||||| | || || ||||| ||||| || Sbjct 172 CAGGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCG--- 116 Query 96631 CGTGCATGTAATAGAACGGGTCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAA 96690 ||| | | | |||| || |||| || ||||||||| || || || || | || || | Sbjct 115 -GTGAA-GAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTA 58 Query 96691 GGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCT 96747 | | ||| || |||| | ||||| ||| || ||||| ||||||||||||| Sbjct 57 AGCCAGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCT 1 >seq626934 Length=584 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 || |||||||| ||||| || |||| ||||||||| | || | || ||||||||| Sbjct 245 GGGGGCGTGGGTCTGAACCTGTGCGGCGCCAACCACCTGCTCCTGCTCGACCCGCACTGG 304 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAAACGC 29463 ||||||||| | ||| ||| ||||||| ||| || |||| | |||||| ||| | Sbjct 305 AACCCGCAGCTCGAGCAGCAAGCGCAGGACCGAGTCTACCGCGTCGGCCAGGACAAGACC 364 Query 29464 GCGCACGTGTACA 29476 | |||| | |||| Sbjct 365 GTGCACATTTACA 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401765821789870