Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq434692 165 5e-36 seq112763 140 2e-28 seq26808 131 1e-25 seq223609 102 5e-17 seq608441 98.7 7e-16 seq1503 95.1 8e-15 seq462883 93.3 3e-14 seq23304 86.0 4e-12 >seq434692 Length=272 Score = 165 bits (182), Expect = 5e-36 Identities = 135/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6153 TCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTAC 6212 ||| ||| |||||| || | ||||| || || || || | || ||||||||||||||| Sbjct 105 TCGTCCAGGATGGGTTCCTTAAACGTGAACCGCAACGTCTCCGATGCGTTCTACCGCTAC 164 Query 6213 AAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATT 6272 || |||||||| || ||||||||||||||||| ||||| ||||| || || |||||||| Sbjct 165 AAGATGCCGCGGATATGCGCCAAGGTCGAGGGGAAGGGGAACGGCATCAAGACCGTCATC 224 Query 6273 GTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 ||||||||||| || ||||| |||||||| || ||||| ||||| Sbjct 225 GTCAACATGCCCGACGTCGCCAAGGCGCTGGGCCGCCCCGCCAC 268 >seq112763 Length=1357 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 629 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 688 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 689 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 723 >seq26808 Length=8541 Score = 131 bits (144), Expect = 1e-25 Identities = 173/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 |||||| ||||| | | ||| || |||||||| ||| || || || ||||| || || Sbjct 7612 ATTACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTC 7553 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || | | || | || ||||||||||| |||||||| || || |||||||| || | Sbjct 7552 TGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGG 7493 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | ||||| ||||| |||||| || ||||| | || ||| || | ||| Sbjct 7492 CGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTC 7433 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTTTAC 38324 || || |||||||| || || ||||| | |||||| ||||||||||||| ||| |||| Sbjct 7432 CACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGTGTTAC 7374 >seq223609 Length=779 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 6480 GAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGC 6539 ||||||||||| |||||||| || ||| | ||||||||||| || || ||||| || ||| Sbjct 1 GAGACCGAGCTGATTGTGTCCACGAAGCGGAACACCATCTCCCAAGGATGCAAGGCCTGC 60 Query 6540 GGTTACCATGGCAAGCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCT 6599 || ||||| || |||| ||||| ||||| | || || || ||||| |||||||| Sbjct 61 GGCTACCACGGGCAGCTTGATTTCAATCACAAGTTGAATACTTTTATACTCAAGAATCCG 120 Query 6600 CCACCTAAAGACCC 6613 || |||| || || Sbjct 121 CCCGCTAATGATCC 134 >seq608441 Length=509 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || || || |||||||| || || |||| |||| || | |||||| || || || Sbjct 498 TCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCGAAA 439 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | || | ||| |||||||| ||||||| || ||||| Sbjct 438 ATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTT 379 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||||| ||| ||||||||||| || |||||||| || | ||||| || Sbjct 378 TCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTAACA 319 Query 38307 AATATCTGCATG 38318 || ||||||||| Sbjct 318 AAAATCTGCATG 307 >seq1503 Length=1697 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 5/72 (7%) Strand=Plus/Plus Query 25923 GTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCAC 25977 ||||||||||||||||||||||| || |||||||||||||| ||||||||| |||| Sbjct 1 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCCTCAC 60 Query 25978 TAATTAGATGAC 25989 |||||||||||| Sbjct 61 TAATTAGATGAC 72 >seq462883 Length=292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 74013 GACTGGCCTGCGA-GTATGACACAAAAACCTTTGGAGCTTGCTGAGGCGGGATTTTATTA 74071 |||||||| | || ||||| || ||||| ||| | || ||||| ||||||| || Sbjct 86 GACTGGCC-GAGATGTATGCGCCAGAAACCCGAGGAATTGGCGGAGGCCGGATTTTTCTA 144 Query 74072 TACGAATAAAGGCGACAGAACAAAGTGCTACTATTGTGACAATGGTTTAAAAGATTGGGA 74131 ||| |||| |||| ||| || |||| |||||||||| || ||||||||||||| Sbjct 145 TACAGGCCAAGGTGACAAAACTAAATGCTTCTATTGTGACGGAGGGCTAAAAGATTGGGA 204 Query 74132 ACCCGAAGATGTGCCCTGGGAACAACACGCTCGTTGGTTTGAC 74174 | || || || || |||||||| |||||| | ||||| ||| Sbjct 205 AAGTGATGACGTTCCGTGGGAACAGCACGCTAGATGGTTCGAC 247 >seq23304 Length=899 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || || || ||||| |||||||| | || || || ||||| ||||||||||| |||||| Sbjct 803 TTCATCCGTAAGTTCGTGCTGTGCCCCGAGTGTGACAACCCCGAGACCGAGCTGATTGTG 862 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAA 6532 || || ||| | ||||||||||| || || ||||| Sbjct 863 TCCACGAAGCGGAACACCATCTCCCAAGGATGCAA 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332200255411703