Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq237220 536 2e-147 seq562919 122 1e-22 >seq237220 Length=3575 Score = 536 bits (594), Expect = 2e-147 Identities = 1177/1752 (67%), Gaps = 30/1752 (2%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| || || | ||| ||||| || ||||||| ||| | ||||| |||||| Sbjct 2441 GCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAAAAA 2382 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| |||| || ||| |||| || || | ||| ||||| | |||||||||| Sbjct 2381 TGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACATGTATATTAAAAGATTGACTT 2322 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || ||||| | || |||||||||| ||| | || || || ||||||| Sbjct 2321 TGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAAATTTCC 2262 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGA 62106 |||| || ||||| || || | || | ||| || | || |||| || || || Sbjct 2261 CAAACTGTCTTATATAAGTCTCGTATT-TCTGTAGGTATACTTTCGATATTTTGTATAGA 2203 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 |||| || ||||| ||| || || || |||| |||||| | | || || | Sbjct 2202 TCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATCCCATAAATCTGCTTCTGTCAG 2143 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGT 62223 | | | ||| | ||| |||| || ||||||||||||||||| || || ||| || Sbjct 2142 ATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGA-- 2085 Query 62224 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62283 ||||||||| || | ||||| | ||| ||||||||||| ||||| || || ||||| Sbjct 2084 -TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGA 2026 Query 62284 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 62341 ||||| ||||| ||||| | ||| | | ||| | ||| || ||| | | || || Sbjct 2025 GGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCC--ATGCTTAGCAATGTTT 1968 Query 62342 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62401 | ||||| || ||| | ||| | ||| | || ||| Sbjct 1967 TTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGATTTTTATTCCACATTTCGTACTGT 1908 Query 62402 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62461 | ||||| ||| || ||| | ||||| ||||| ||| | ||| || ||| Sbjct 1907 AATATACCTAGACTTGCAGGGCTCCCTTCGTATGTTTCGTACACTCCATACTTTTCTGCT 1848 Query 62462 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62521 | ||||||||| || |||||||| || || ||||| ||||| || || | | |||||| Sbjct 1847 AATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTAGT 1788 Query 62522 TCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 62581 | ||||| | || || | || || | | |||||| || || || | ||| Sbjct 1787 TTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGACCT 1728 Query 62582 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62641 |||||||| || || ||||||| ||| || ||| || ||| ||||| |||| |||| Sbjct 1727 TGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGA 1668 Query 62642 TAATAATTAATATCTATAATTTTATTGAGATTT-CTG--ACAATTACTTTGACCACATCC 62698 |||||||| | || || |||||||| | |||| ||| ||| || || || || Sbjct 1667 TAATAATTTACGTCAATGATTTTATTCAAATTTTCTGTTACAGTT---TTAGTAACTTCT 1611 Query 62699 TTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTACAAACATGTTCAATGCAACAGAT 62755 || | ||| ||||| | || ||| | |||||||| || | |||| ||| Sbjct 1610 TTTAATTTCGCAAAATTATATGTTTTGTTATCATTAACAAACATATTTAGGGCAATAGAA 1551 Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 || | || || || || || |||| | || | | ||| || ||| |||||||| || Sbjct 1550 GCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAGG 1491 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 |||||||| || ||||| |||||||||| |||||||| ||| | ||||| | ||| ||| Sbjct 1490 TTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTA 1431 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935 | | ||| ||||||||||||| || | |||| |||||| || |||||||| | ||| Sbjct 1430 AATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGTACT 1371 Query 62936 CGAGC-CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC 62994 | || ||| || | | | |||| |||||| |||| || | ||| || ||| Sbjct 1370 TGTGCTCTTACTTGTTTA-ATAAATCTATTTTCTTTTTCATAGGTTTCATATAAGGATTC 1312 Query 62995 GAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCA 63054 || || | ||||||| | | | ||||| || || | |||||||| | | ||| Sbjct 1311 AAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGGTCCA 1252 Query 63055 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 63114 | || |||| | |||| |||||| || |||||||| ||||| | || ||| || Sbjct 1251 TACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAG 1192 Query 63115 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63174 || |||| | ||| || ||||| || || || || | ||| | ||| | | || Sbjct 1191 TTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTTTCTTTAAATCTAAGAATTCAAATAT 1132 Query 63175 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63234 ||| | |||||| ||||| || || | || | | | ||||| || || || ||||| || Sbjct 1131 ATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTCCTTG 1072 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 63294 ||| | |||||||| || ||||| ||||||| |||||||| | || |||||| || Sbjct 1071 ATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGACAC 1012 Query 63295 ACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT--AATTGATAGACCT 63352 |||||| || |||| ||||| | || | || | ||| | | | || | ||| Sbjct 1011 ACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATA-CAGTGGACATG-GACACCA 954 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 ||||| ||||| |||||| || || || || | ||||| ||||| || || || ||| Sbjct 953 ATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATCCCTTCT 894 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472 || |||||||| |||| | ||||||||| || | || | || |||| | Sbjct 893 ATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGCA 834 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 || ||||||||||| || ||||| || |||| |||||||||| ||| || || Sbjct 833 GCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAATTATATGTA 774 Query 63533 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 | || |||| || ||||| ||||||||| | | || | ||| ||||| || Sbjct 773 TTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGACACTCTCATCAACATATGT 714 Query 63593 TGAGGTCTTTCA 63604 ||||||| |||| Sbjct 713 TGAGGTCGTTCA 702 >seq562919 Length=404 Score = 122 bits (134), Expect = 1e-22 Identities = 145/196 (74%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || |||||||| ||||| || || | |||||| ||||| || ||||| ||||| || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || || || ||||||||||| || |||||||||| || ||| || || || | || | Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACC--AAATGTTGCAG 113 Query 32832 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || || ||||||| | |||||||||| || ||||| |||||||| || | || | Sbjct 112 TCTTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTT 53 Query 32887 CTATAGCATTAAAGAG 32902 | || |||||||| || Sbjct 52 CAATGGCATTAAACAG 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628302259874800