Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq51755 318 5e-82 seq26808 158 1e-33 seq255931 116 3e-21 seq525368 82.4 7e-11 >seq51755 Length=2487 Score = 318 bits (352), Expect = 5e-82 Identities = 658/967 (68%), Gaps = 13/967 (1%) Strand=Plus/Minus Query 57199 TAATCAACCACGCCTTCCTCCCACGTGCCGTGCACAGGCCCACTTCCTTTACCCGTGAAC 57258 ||||| |||||||| |||| ||| || || | || || ||| | || || |||||| Sbjct 1946 TAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAAC 1887 Query 57259 GGATTGTTGTCCGTGTAGTCGTGCACACCCGTCCATCCTCGACCGTACATGGCCACGCCA 57318 || ||| ||| ||||||| || || || ||||| || || |||||||| || || || Sbjct 1886 GGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACCG 1827 Query 57319 ACCACTAT-TTTGTCAGCGGA-CACGTTCTGCGCTAACAAAGTGCGTACAGCATTGTCTG 57376 || || | ||| | ||||| ||| || | | | || | | | | | ||| | Sbjct 1826 ACAACCAGCTTTTTGGGCGGAACACCTT--GGGTCAGCAGATACCTGATACCGAAGTCGG 1769 Query 57377 TGGTATATGGTTCGCTAGGGTTCCACAGA-GGCGCATAAATGTTGGTTTGATAGCCCAAA 57435 |||| || | ||| | || |||| ||| || || || | ||| |||| || | | Sbjct 1768 TGGTGTAAGTTTCCTTTGGACTCCA-AGACGGAGCGTATAGAGCGGTCTGATGTCCGAGA 1710 Query 57436 TTTGTGTTACTCCAGGCACCTTTAAAATCGTACGACATTAAGAATATGCTGTCGAGATAT 57495 | |||| ||||||||| || || ||||| ||| | ||| || || | || Sbjct 1709 GTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTAC 1650 Query 57496 TTTTGCGCATGATTGTAATCGACAAGTTCGATTTTATCATTACCGGCGCCGATGGCTGTT 57555 || || || | ||||| | |||| || ||| || || |||||| | |||||| | Sbjct 1649 TTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAG 1590 Query 57556 GTGAGCAA-TAGTTTACGATCAGTTTCCAGTTCCAACTCGTCCAACATTAATCTCAAATC 57614 || ||| || || | | |||| || ||| ||| ||||||||| | || || Sbjct 1589 GTCAGCTCGTAAGTT-CTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTC 1531 Query 57615 TTTCAATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGGTCGCCCAACAAAGGATTAGC 57674 ||||| ||| | |||||| |||||||| | || | || | ||| ||||| Sbjct 1530 TTTCATGAGCTGAACGTATACATCTCCGTCTTTA---GGACCACCGAGGTCAGGGTTAGC 1474 Query 57675 ACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCATCAAAAAATTTCCACACTTT 57734 || || || ||||| || ||||||||||| ||||| ||||| || || ||||| || Sbjct 1473 GCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTG 1414 Query 57735 GATGTAGTCGCGCACCGATTGCACAAAAGTGTTGCGAATAGTGTCGTCGTGCATGAAAAA 57794 || | |||| ||| || || ||| || || | || | ||| | ||| || Sbjct 1413 GAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCGGTGAAGAAGAA 1354 Query 57795 GAAGGGATCCGATAAGGTCCAACCACCAATGGATGGCAATACTTTTAGATGCGGATATGC 57854 ||||||||| | || ||||| |||||||| || || || | |||| | | || || Sbjct 1353 GAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTATTCGC 1294 Query 57855 TTTTTTGACCGCCATCAGTTGACCAAAATTACCTTTGTAAGGTTCGTTCCAAGCCGATAC 57914 || ||| | | |||||| || || || ||||||||||| || |||||||| | ||||| Sbjct 1293 TTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAA 1234 Query 57915 TCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCGTGTATCGTTACTTTGAAATCTTC 57974 ||| | ||||||||| || || |||||||| |||||||| || | || ||||| ||||| Sbjct 1233 TCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTC 1174 Query 57975 TCGGCCTGCACACGAACGTTGCAACGCTTCAAAACTACCTGTAATCGTCTTT-AGACTGT 58033 ||||| || ||||| ||||| |||| |||||| ||| ||| ||||| | ||||| Sbjct 1173 ACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATT-TCTTTCAAACTGT 1115 Query 58034 CGTTGATGCCATCGCCTCCGCAAATAGGCACGAAACCGTACAACAAATGAGTCAAATTGG 58093 | ||||||||||| || || ||||| || | ||| ||||| | ||||||||||| || | Sbjct 1114 CATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCG 1055 Query 58094 GTACGGGTACTTTATCAACTGGATATTTACGACCGTACACACTCCACTCCACGAAATAAG 58153 | || || | || || || | || | | ||||| | ||| || ||||| || | Sbjct 1054 GAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGTAGG 995 Query 58154 CTCCCAC 58160 | ||||| Sbjct 994 CGCCCAC 988 >seq26808 Length=8541 Score = 158 bits (174), Expect = 1e-33 Identities = 179/238 (75%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| ||||| || || || | || || || |||| ||| | || ||||| | Sbjct 7379 ACAATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCT 7438 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || ||||||||||| |||| |||| |||| ||| ||||| ||||| ||||| || Sbjct 7439 TCCGACACTATCGAAAATGTCA---AAGCTAAAATTCAA-GACAAGGAAGGTATTCCGCC 7494 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 |||||||| || | || |||||||| |||||||||||||||| |||||| | || Sbjct 7495 AGACCAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGA 7554 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 || ||||| || ||||||||||| || |||||||| | || || |||||||| ||| Sbjct 7555 CTATAATATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGGTAAT 7612 >seq255931 Length=537 Score = 116 bits (128), Expect = 3e-21 Identities = 302/457 (66%), Gaps = 5/457 (1%) Strand=Plus/Minus Query 57441 GTTACTCCAGGCACCTTTAAAATCGTACGACATTAAGAATATGCTGTCGAGATATTTTTG 57500 |||| ||||||||| || || ||||| ||| | ||| || ||| | || || || Sbjct 455 GTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCATGTACTTCTG 396 Query 57501 CGCATGATTGTAATCGACAAGTTCGATTTTATCATTACCGGCGCCGATGGCTGTTGTGAG 57560 || | ||||| | |||| || ||| || || |||||||| |||||| | || || Sbjct 395 GGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAG 336 Query 57561 CAA-TAGTTTACGATCAGTTTCCAGTTCCAACTCGTCCAACATTAATCTCAAATCTTTCA 57619 | || || | | |||| || ||| ||| ||||||||| | || || |||| Sbjct 335 CTCGTAAGTT-CTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCA 277 Query 57620 ATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGGTCGCCCAACAAAGGATTAGCACCAT 57679 ||| | |||||| |||||||| | || | || | ||| ||||| || | Sbjct 276 TGAGCTGAACGTATACATCTCCGTCTTTA---GGACCACCGAGGTCAGGGTTAGCGCCTT 220 Query 57680 TACCACCAGGAAATTCCCAATCAATGTCGACTCCATCAAAAAATTTCCACACTTTGATGT 57739 | || ||||| || ||||| ||||| ||||| ||||| || || ||||| || || | Sbjct 219 TGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGA 160 Query 57740 AGTCGCGCACCGATTGCACAAAAGTGTTGCGAATAGTGTCGTCGTGCATGAAAAAGAAGG 57799 |||| ||| || || ||| | || | || | ||| | ||| ||||||| Sbjct 159 AGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCGGTGAAGAAGAAGAAGG 100 Query 57800 GATCCGATAAGGTCCAACCACCAATGGATGGCAATACTTTTAGATGCGGATATGCTTTTT 57859 |||| | || ||||| |||||||| || || || | |||| | || |||| || Sbjct 99 GATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGCCAGTATTCGCTTGTT 40 Query 57860 TGACCGCCATCAGTTGACCAAAATTACCTTTGTAAGG 57896 | | | |||||| || || || ||||||||||| || Sbjct 39 TCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGG 3 >seq525368 Length=351 Score = 82.4 bits (90), Expect = 7e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 51106 GGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCAT- 51164 ||||| | ||||| | |||||||||||||| | | |||| |||| || || ||| Sbjct 221 GGATCTCTCCCATCGATACTGTAATGATCGTTCAAATATATTGCAT-ACTTAAGAGCATC 163 Query 51165 GTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTG 51224 || | | ||| |||||||||| |||||||| ||| ||||| | | | || || Sbjct 162 CTCCGGAGTAGCAGTCCATTCCAATATTTTCTTACACCAATACATTCTTAAAAAGCCATG 103 Query 51225 CATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTT 51283 ||| |||||||| | ||| || |||||||| |||||||| || || ||||||| Sbjct 102 CATTTTGCCCTCTTTAACAAGTTGTAGCTGAGCCGAATTCCACAAATCATCATGAGTTT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429774221958095