Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq51755 307 1e-78 seq255931 158 1e-33 >seq51755 Length=2487 Score = 307 bits (340), Expect = 1e-78 Identities = 544/789 (69%), Gaps = 13/789 (2%) Strand=Plus/Minus Query 51655 AGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGC 51714 ||||||||||||| |||| | || |||| || ||| | || | |||||| | | Sbjct 1774 AGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTC 1715 Query 51715 CCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCA 51774 | ||| | ||| ||||| ||||||||||| ||||| |||||| |||||| | ||||| Sbjct 1714 CGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCA 1655 Query 51775 ACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGG 51834 | | |||| || ||||| || ||||| || || || | || || ||||||| Sbjct 1654 TGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGG 1595 Query 51835 CGCTGGTCAACAGGTACGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCA 51894 | ||||| | ||| | | || | || || ||| || | ||| | || | Sbjct 1594 CAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTA 1535 Query 51895 GCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGAT 51954 || ||| ||| ||||| | || || | ||| | || ||||| || | Sbjct 1534 ATTCTTTCATGAGCTGAACGTATACATCTCCGTCTTTA---GGACCACCGAGGTCAGGGT 1478 Query 51955 TGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAG 52014 | |||||||||||||| || |||||||| || | ||||| || |||||||||||||| | Sbjct 1477 TAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGG 1418 Query 52015 TCAGCAGAAACTCGCGAACCGATTCGACGAA--GGTTGCGC---GTTTGCTCGCGTCGTG 52069 | | || || || || || | ||||| ||| ||| |||| ||| ||| Sbjct 1417 TTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCG----GTG 1362 Query 52070 CAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGA 52129 || |||||||| ||||||| || ||||| || || ||||| || | ||||| | Sbjct 1361 AAG-AAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACC 1303 Query 52130 AGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCA 52189 || ||| || |||| | ||||||||| || ||||| || ||||| || |||||||| Sbjct 1302 AGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCA 1243 Query 52190 GGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTT 52249 || ||| | || || || || |||||||| ||||||||||||||||| || | ||||| Sbjct 1242 GGACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTT 1183 Query 52250 AAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTT 52309 ||||| | ||| ||| || || ||||| |||| |||||| || || ||| Sbjct 1182 GAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTT 1123 Query 52310 CAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGA 52369 || ||||| |||||||| || || || || || || ||||||||||| |||| ||| | Sbjct 1122 CAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGT 1063 Query 52370 CAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGAC 52429 ||||||||| | ||| | | || ||||| || || | || |||||||||||||| Sbjct 1062 CAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGAC 1003 Query 52430 AAAGTAGGC 52438 |||||||| Sbjct 1002 GAAGTAGGC 994 >seq255931 Length=537 Score = 158 bits (174), Expect = 1e-33 Identities = 351/526 (67%), Gaps = 3/526 (1%) Strand=Plus/Minus Query 51655 AGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGC 51714 ||||||||||||| |||| | || |||| || ||| |||| | |||||||| | Sbjct 525 AGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGTC 466 Query 51715 CCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCA 51774 | ||| | ||| ||||| ||||||||||| ||||| |||||| |||||| | |||| Sbjct 465 CGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCA 406 Query 51775 ACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGG 51834 | | |||| || ||||| || ||||| || || || | || |||||||||| Sbjct 405 TGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGG 346 Query 51835 CGCTGGTCAACAGGTACGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCA 51894 | ||||| | ||| | | || | || || ||| || | ||| | || | Sbjct 345 CAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTA 286 Query 51895 GCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGAT 51954 || ||| ||| ||||| | || || | ||| | || ||||| || | Sbjct 285 ATTCCTTCATGAGCTGAACGTATACATCTCCGTCTTTA---GGACCACCGAGGTCAGGGT 229 Query 51955 TGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAG 52014 | |||||||||||||| || ||||||||||| | ||||| || |||||||||||||| | Sbjct 228 TAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAGG 169 Query 52015 TCAGCAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTCGCGTCGTGCAGGA 52074 | | || || || || || | ||||| | || ||| | ||| | || Sbjct 168 TTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCGGTGAAGA 109 Query 52075 AGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGAT 52134 ||||||| ||||||| || ||||| || || ||||| || | ||||| | || || Sbjct 108 AGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGCCAGTAT 49 Query 52135 TGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGG 52180 | || |||| | ||||||||| || ||||| || ||||| || Sbjct 48 TCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533081197723480