Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq51755 309 3e-79 seq237220 230 2e-55 seq26808 150 1e-31 seq608441 134 1e-26 seq255931 122 7e-23 >seq51755 Length=2487 Score = 309 bits (342), Expect = 3e-79 Identities = 799/1210 (66%), Gaps = 17/1210 (1%) Strand=Plus/Minus Query 48509 ATTGCCAAGGCCAATGTGCATAGCATTCAACAAATCGCCATTGTCAGCGTCGATTTCCCA 48568 ||| || || || || | ||| || || | | ||| |||||||||||||| |||||||| Sbjct 2184 ATTCCCTAGACCCATATTCATTGCGTTTAGGATATCCCCATTGTCAGCGTCTATTTCCCA 2125 Query 48569 TGCAAAGAGGCCTCCTAAATTGTTGTCTAGCACGTATTGACCTTTGTCCATAACAGATTG 48628 || || || || || | || |||| |||||||| || || || ||||| || Sbjct 2124 AGCGAACAGTCCACCAAGCTTATTGTTCCTCACGTATTTCCCCTTCTCAATAACCGACCT 2065 Query 48629 TACACTATCGTAACTGATGAGATCACCACTGTCCGCTTTGGTCACGTACGCTGCTTTAGC 48688 | || ||| || | | || || || || | || |||||||| |||| | Sbjct 2064 TGCATCATCATAGGTCACCAGGTCGCCGGTGGTAGGATTCCACACGTACGGAGCTTGGGA 2005 Query 48689 GGTGTCGTCATACCTATATT--TG---TATTCGTTAAT--ACGCGATTGA--ATGTGCCT 48739 | | ||||| ||| | || | ||| | || | || ||| || | ||| Sbjct 2004 TATTTTATCATA---ATAGTACTGCCATGTTCCTGAAGTGATGCCATTCGTGATCTCCCT 1948 Query 48740 ATAGTCGACGACACCGTCCTCCCACGTCCCGGTAACGGGGCCGACGGCCACACCGCTAAA 48799 ||| || || || ||||||| ||| || || |||| ||||| || || ||| | || Sbjct 1947 ATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAA 1888 Query 48800 GGGGTTATCGTCGCTGTAATCGAGGACACCGGTCCATCCGCGACCGTACATTGCCACACC 48859 || | ||||| |||| || | || || ||||| || || |||||||| || ||||| Sbjct 1887 CGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACC 1828 Query 48860 CAATACAATTTTGTTGGGTCTCACGCGTTGGTCCAAAAGAGCATTCACCGCAAAATCCGT 48919 | || | || ||||| || | |||| || ||| | | | || || || Sbjct 1827 GACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCGAAGTCGGT 1768 Query 48920 AGTGTAATGTTCGTTTACATTCCATTTCGGAGCATACAATGCCGTCTGGTGACCCAAATC 48979 |||||| ||| ||| | |||| |||||| || | || ||||| || || | | Sbjct 1767 GGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAGT 1708 Query 48980 AACATTCGACCAGGCACCCTTAAAATCGTAGTTCATTAAAAATATTTTATCTAAATAATT 49039 | || |||||||||||||| || ||||| |||| | || || | ||| | || || Sbjct 1707 GTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTACTT 1648 Query 49040 TTGGGCATCGTTGTATTTAACCACGGCAATTTTGTCGTCGCCTGCGCTAATGGCGCTTGT 49099 ||||| || ||||| || || || || ||||| || || || ||||| || Sbjct 1647 CTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGGT 1588 Query 49100 TAATTCAAAATTACGGCCGGTTTCGCGTTCAAGATCGTCGAGCATTTCGCGTAATTCTTT 49159 | || || | | || || || | || || || | ||||| ||||||||||| Sbjct 1587 CAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTCTTT 1528 Query 49160 CAAGAGAACAACATAAGTGTGTCCGTCGTGTTGCGAATCGCCCAACAACGGATTCGCCCC 49219 || ||| ||| || | |||||| || | | | || | || || || || Sbjct 1527 CATGAGCTGAACGTATACATCTCCGTC---TTTAGGACCACCGAGGTCAGGGTTAGCGCC 1471 Query 49220 TTTGCCGCCCGGAAATTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCAAGTTAACAA 49279 ||||||||| || || |||||||| || ||||| || ||||| || ||||| ||| | Sbjct 1470 TTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAG 1411 Query 49280 AAATTCGCGCACCGAATCTACAAACACGTCACGTTTATGCGCATCGTGCATAAAGTAAAA 49339 || || ||| || | || || |||||| || |||| | ||| | || Sbjct 1410 GAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCGGTGAAGAAGAAGAA 1351 Query 49340 TGGATCGGACAACGTCCAACCCCCGATGGATGGCAATACTTTTAAATTGGGATTTGCTTT 49399 ||||||| ||| ||||| || || || || || || | |||||| | ||| |||| Sbjct 1350 GGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTATTCGCTTG 1291 Query 49400 TTT-AATTGCCATCAATTGACCGAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACAC 49458 ||| || ||| |||| || ||||| || |||||||| || |||||||| | || | | Sbjct 1290 TTTCAACTGC-ATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATC 1232 Query 49459 CTTTTTGGGGTTTTTGCAGCGCAGCCCACGGATCGTGAATAGACACTTTGAAATCGTCCC 49518 | ||||| || || ||||| || ||||| |||||||| ||||| || ||||| || || | Sbjct 1231 CCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCAC 1172 Query 49519 GGCCAGCGCAACTTTTTTGTAATGCCTCAAAACTGCCCGTTATCGTTTTCAAACTGTCGT 49578 |||| ||| || ||||| | ||||||||| || |||||||||||| | Sbjct 1171 GGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAACTGTCAT 1112 Query 49579 TAATGCCGTCGCCCCCGCAAATTGGCACGAAACCGTACAGCAGATGCGATAGATTTGGTG 49638 | ||||| || || || ||||| || | ||| ||||| |||| ||| | || || || Sbjct 1111 TGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCGGAA 1052 Query 49639 CGGGTACGCGATCGGCGGGAAACGATCGACCGTACACACCCCACTCGACAAAGTACGCAG 49698 | || | ||| || |||| ||| || | ||||| ||||| ||||| ||||| || Sbjct 1051 CCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGTAGGCGC 992 Query 49699 CGACAACTTT 49708 | |||||||| Sbjct 991 CCACAACTTT 982 >seq237220 Length=3575 Score = 230 bits (254), Expect = 2e-55 Identities = 715/1098 (65%), Gaps = 29/1098 (3%) Strand=Plus/Minus Query 128776 GACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATG 128835 || || || || ||||| | || || | || || || || || |||||||| ||||| Sbjct 2474 GATTTATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATC 2415 Query 128836 CCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTG 128895 |||||||| ||||| ||||||| | | | ||||| | || ||| |||| | Sbjct 2414 CCTGTTTTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTC 2355 Query 128896 GGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCA 128955 || | | | | |||||||| |||||||||||||||||||| | || ||||| ||| Sbjct 2354 GGCTCAGCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCA 2295 Query 128956 GCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACG 129015 ||||| || |||| ||| |||||||| || || || || | |||| | Sbjct 2294 GCCATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATT 2235 Query 129016 TGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGC 129075 | | | ||||| ||| || || || | || || || ||||| ||| | Sbjct 2234 TCTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTC 2175 Query 129076 ATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACT 129135 || | || | | |||| || ||| ||| ||| | | |||| ||| Sbjct 2174 ATTTCCTCATCCCATAAATCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACT 2115 Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195 ||||| || || | ||||| || | ||||| || ||||| || ||||| ||| Sbjct 2114 TGAAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGAT 2055 Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAG 129255 ||||| || ||||| || || || |||| || |||||||| || | |||| || Sbjct 2054 TCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAA 1995 Query 129256 TTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTG 129315 || || | || |||| ||||| ||||||||| ||||||||||| | ||| Sbjct 1994 TTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTT 1935 Query 129316 GGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAG 129375 || | | |||||||| ||||| || |||||||| | ||| || || || ||| Sbjct 1934 GGATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCGTAT 1875 Query 129376 GAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAA 129435 | |||| ||| || || || ||| ||||| ||||| ||||| ||||| ||| | ||| Sbjct 1874 GTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGTAA 1815 Query 129436 ATTGTTTCGGCAATT--TTGGT---GTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCA 129490 || ||||| ||| ||| | ||| || | || |||| |||||||| || | Sbjct 1814 ATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTT---CTGG--ACTTTCGTAAGGTA 1760 Query 129491 TACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTT 129550 ||||| | ||| | || || | |||||||| ||| | || || |||||||| Sbjct 1759 AACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCC 1700 Query 129551 TTCTATTGGATTTTTGTGC--CGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTT 129608 | ||||||||||| ||| | |||| ||||| || || | ||| || ||||| || Sbjct 1699 TAAAATTGGATTTTTTTGCTTCCGGAACA--GGATAATAATTTACGTCAATGATTTTATT 1642 Query 129609 TAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTAC 129668 ||||| | ||| |||| || || | |||||| | ||||||| || | Sbjct 1641 CAAATTTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATA------TGT 1588 Query 129669 ATCGATGTC---GACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTC 129725 | | | || ||||| ||| | ||| || || || ||||| || || ||| Sbjct 1587 TTTGTTATCATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTC 1528 Query 129726 GTTTTTGTCA-CTGT--ACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCC 129782 | ||| ||| | || || ||||| | ||||| |||||| ||||||||| || Sbjct 1527 ---ATCATCAGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACC 1471 Query 129783 CAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCC 129842 |||| || ||||||||||| | || || | |||||| | | |||||| || || || Sbjct 1470 TAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACC 1411 Query 129843 CGTTTCGACTTGCGTTTC 129860 || || ||||| | ||| Sbjct 1410 AGTCTCTACTTGAGCTTC 1393 >seq26808 Length=8541 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || | || | || |||||| | || Sbjct 7382 ATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCC 7441 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||||||||||||||||| |||||||| || || ||| Sbjct 7442 GACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCCAGACCAA 7501 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| ||||| ||||| ||| |||||| | || || || || Sbjct 7502 CAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAAT 7561 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | |||||||||||| || | | |||||| Sbjct 7562 ATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGGT 7609 >seq608441 Length=509 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||||||| | || |||||||| | || | ||||| ||| || | Sbjct 308 ATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCT 367 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||||||||||||| ||||| ||||| || ||||| Sbjct 368 GATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 427 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || ||||| | || || || || | |||||||||||| Sbjct 428 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACAAC 487 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 488 ATCCAGAAAGAATCGAC 504 >seq255931 Length=537 Score = 122 bits (134), Expect = 7e-23 Identities = 348/529 (66%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 48912 AAATCCGTAGTGTAATGTTCGTTTACATTCCATTTCGGAGCATACAATGCCGTCTGGTGA 48971 || || || |||||| ||| ||| | |||| |||||| |||| || |||||||| Sbjct 526 AAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGT 467 Query 48972 CCCAAATCAACATTCGACCAGGCACCCTTAAAATCGTAGTTCATTAAAAATATTTTATCT 49031 || | | | || |||||||||||||| || ||||| |||| | || || | || Sbjct 466 CCGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCC 407 Query 49032 AAATAATTTTGGGCATCGTTGTATTTAACCACGGCAATTTTGTCGTCGCCTGCGCTAATG 49091 | || || ||||| || ||||| || || || || ||||| || ||||| ||| Sbjct 406 ATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATG 347 Query 49092 GCGCTTGTTAATTCAAAATTACGGCCGGTTTCGCGTTCAAGATCGTCGAGCATTTCGCGT 49151 || || | || || | | || || || | || || || | ||||| ||| Sbjct 346 GCAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGT 287 Query 49152 AATTCTTTCAAGAGAACAACATAAGTGTGTCCGTCGTGTTGCGAATCGCCCAACAACGGA 49211 ||||| |||| ||| ||| || | |||||| || | | | || | || Sbjct 286 AATTCCTTCATGAGCTGAACGTATACATCTCCGTC---TTTAGGACCACCGAGGTCAGGG 230 Query 49212 TTCGCCCCTTTGCCGCCCGGAAATTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCAA 49271 || || ||||||||||| || || ||||| || || ||||| || ||||| || ||||| Sbjct 229 TTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAG 170 Query 49272 GTTAACAAAAATTCGCGCACCGAATCTACAAACACG-TCACGTTTATGCGCATCGTGCAT 49330 ||| | || || ||| || | || || ||| ||||| || |||| | Sbjct 169 GTTTGGAGGAAGTCTTTCACGGAGGCAACGAA-ACGATCACGCTTGGTTTTATCGGTGAA 111 Query 49331 AAAGTAAAATGGATCGGACAACGTCCAACCCCCGATGGATGGCAATACTTTTAAATTGGG 49390 ||| | || ||||||| ||| ||||| || || || || || || | ||||| | Sbjct 110 GAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGCCAGT 51 Query 49391 ATTTGCTT-TTTTAATTGCCATCAATTGACCGAAATTGCCTTTGTACGG 49438 ||| |||| ||| || || ||||| || ||||| || |||||||| || Sbjct 50 ATTCGCTTGTTTCAACTG-CATCAGCTGCCCGAAGTTACCTTTGTAGGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416285757287845