Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq26808 197 3e-45 seq608441 136 7e-27 seq10425 104 4e-17 seq219547 100 5e-16 seq162377 95.1 2e-14 seq127142 84.2 4e-11 >seq26808 Length=8541 Score = 197 bits (218), Expect = 3e-45 Identities = 192/247 (78%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||| ||| ||||| | ||| | ||| || || || || ||||| ||||| ||||| || Sbjct 7618 ATTTATATTACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATT 7559 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 ||| || || || || | ||||||||||| || || ||||| || ||||| | |||||| Sbjct 7558 ATAGTCTGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTG 7499 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 ||| || ||||| ||||||||||||||||| || || ||||| ||||| ||||| | Sbjct 7498 GTCTGGCGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGA 7439 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 | ||| || ||||| || ||||| || ||||| ||||| |||||||||||||||||| | Sbjct 7438 AGCTTCCACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGT 7379 Query 68465 GCTATTA 68471 | || || Sbjct 7378 GTTACTA 7372 >seq608441 Length=509 Score = 136 bits (150), Expect = 7e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || || || ||||| |||||||| |||||||| | ||| | || ||||| | || ||| Sbjct 507 AGAGTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTC 448 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || |||| || || || || |||||||| || ||||||||||| ||||| Sbjct 447 CCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCT 388 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || ||||| || | | ||| ||||| || || |||||||| || ||||| Sbjct 387 TTTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGA 328 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 327 GTTTTAACAAAAATCTGCAT 308 >seq10425 Length=666 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || ||||| | ||| || || || || ||||||||||||||||| || || ||||||| Sbjct 456 CTCTGTTGATTGGGAGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCTCGATG 397 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 || |||| | || || || | ||||||||| || |||||||||||||| ||||| || Sbjct 396 GTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATT 337 Query 68457 TGCAT 68461 ||||| Sbjct 336 TGCAT 332 >seq219547 Length=1641 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || ||||| | ||| || || || || |||||||||||||| || || || ||||||| Sbjct 1198 CTCTGTTGATTGGGAGGGATTCCCTCTTTGTCTTGAATCTTAGCTTTCACATTCTCGATG 1257 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 || |||| | || || || | ||||||||| || |||||||||||||| ||||| || Sbjct 1258 GTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATT 1317 Query 68457 TGCAT 68461 ||||| Sbjct 1318 TGCAT 1322 >seq162377 Length=1555 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| |||||||| ||||| ||||| || ||| || ||||| | || |||||||||| Sbjct 223 CCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCGGATGCTTCTACTTCC 164 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || |||||||| || || || || || || ||||| ||||||||| Sbjct 163 AATGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAGATCTGCATT 119 >seq127142 Length=1601 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 268379 GTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCG 268438 || ||||| ||||||| || | || |||||||||||||| || | ||||| || ||| Sbjct 235 GTGACGAAGTTCTCGCCGCGCCGCGGACTCTCGTGGTTGAACAGCAGTCCGTTACAGGCG 294 Query 268439 AACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482 ||||| ||| ||||| | |||||||||||| |||| ||||| Sbjct 295 AACATTTGATACGCCTCTCTGTAGTTCACGACTATCCAATATGC 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913870253824360