Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq51755 156 3e-33 >seq51755 Length=2487 Score = 156 bits (172), Expect = 3e-33 Identities = 566/878 (64%), Gaps = 21/878 (2%) Strand=Plus/Minus Query 83856 CCGGTCCAACCGCGGCCGTACATGGCAACGCCAATAATTATTTTGTTGGGATCAACACCC 83915 || ||||| || || |||||||| ||||| || | || | || ||||| |||||| Sbjct 1859 CCTGTCCAGCCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCGGAACACCT 1800 Query 83916 TGTTTAAGTAGCACACTGACAGCGTGATGTGTGGTGTATAACTCTTCCGAGTTCCAACTC 83975 || | || || |||| | || | |||||||| || | | ||||| | Sbjct 1799 TGGGTCAGCAGATACCTGATACCGAAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGAC 1740 Query 83976 GGCGCGTAAATTGTGGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCACCTTTAAAATCA 84035 || ||||| | | ||| || | || | | ||| ||||| ||||| || || || Sbjct 1739 GGAGCGTATAGAGCGGTCTGATGTCCGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCG 1680 Query 84036 TAATTCATTA--AAAATATTTTTCCTAAAGACTTTTGCGCCTCGTCATAGTTTACCACGG 84093 ||| |||| | ||||||| | | | | ||| || || || | ||||| || || Sbjct 1679 TAACTCATGACGAAAATATGATCCATGTA--CTTCTGGGCTTCCTTGTAGTTCACAACTT 1622 Query 84094 CAATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAATTCGTAAACCCTGCCAGTTTGCG 84153 |||||||| |||| ||||| || || || | |||||| || ||||| | | Sbjct 1621 GGATCTTGTCCCAACCGGCACTGATGGCAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAG 1562 Query 84154 ATTCTAGCTCGTCTAACATTGCGCGCAGTTCCTCTAATATTAAAATGTATGTTTTGGCGT 84213 | ||||| || |||||| || | ||| | | | || |||| | ||| Sbjct 1561 CCGCCAGCTCATCCAACATTTGACGTAATTCTTTCATGAGCTGAACGTATACATCTCCGT 1502 Query 84214 CACGTTCAGCATCCCCCAACGAC-GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCG 84272 | || || | || || | | | ||||| || |||||||| || || || |||||||| Sbjct 1501 C---TTTAGGA-CCACCGAGGTCAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCA 1446 Query 84273 ATGTCTACACCGTCGAAAAATTTCCATACTTGTAAAAACTCCTTAACCGAATTTACAAAA 84332 || || ||||| ||||| || ||||| ||| | || || || || || || ||| Sbjct 1445 ATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAA 1386 Query 84333 -----ACGTTTCTTTTTTCAACATTGTGCATGAAATAAAACGGGTCCGACAACGTCCATC 84387 ||| || |||| || | | ||| | || || || | ||| ||||| | Sbjct 1385 CGGTCACGCTTGGTTTT-----ATCGGTGAAGAAGAAGAAGGGATCGGCCAATGTCCAGC 1331 Query 84388 CTCCTATGGACGGAAGAATCTTTAGGTGCGGGTTCGCCAATTT-AGCTGCCATCAATTGT 84446 | || || || || | ||||||| | ||||| ||| | |||| |||| || Sbjct 1330 CACCAATCGAAGGTAAGATCTTTAAACCAGTATTCGCTTGTTTCAACTGC-ATCAGCTGC 1272 Query 84447 CCAAAATTGCCTTTATACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACG 84506 || || || ||||| || || |||||||| | || | |||||||| ||||| || | | Sbjct 1271 CCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGGCTTCTGCAGG 1212 Query 84507 GCGGCCCACGGATCGTGGATGGCAATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGC 84566 || ||||| ||||||||||| | || || || || |||| || ||||| || || ||| Sbjct 1211 GCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACGCTGC 1152 Query 84567 AGAGATTCGAAACTACCGGGTATCACTTTGAGAGCATCGTTTATTCCATTACCGCCGCAA 84626 | | || ||||| || || |||| | | || || || |||| ||| || ||| Sbjct 1151 AATGCTTGAAAACTGCCTTCAATTTCTTTCAAACTGTCATTGATGCCATCACCACCACAA 1092 Query 84627 ATGGGTATGAAACCGTACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGA 84686 || || ||||| ||||| | ||| || | | || || | || | ||| ||||| Sbjct 1091 ATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCGGAACCGGGATGCGGTCCACGGGG 1032 Query 84687 AAATTGCGCCCGTACACTCCCCATTCAACAAAATACGC 84724 || || | ||||| |||||||| || || || || Sbjct 1031 AACTTTCTAGGATACACGCCCCATTCGACGAAGTAGGC 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355187772966202