Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq33103 89.7 1e-14 seq671859 77.0 8e-11 >seq33103 Length=2217 Score = 89.7 bits (98), Expect = 1e-14 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 3370 ACTTTTCA-CAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCT 3428 |||||||| ||||| |||| | || ||| ||||| |||| | ||||||||| | Sbjct 36 ACTTTTCAACAAATTCGGTTCATCCGGCGAGGTGGAACGGCACGACGCGCTCTGCATCTT 95 Query 3429 CCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTT 3479 || |||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 96 GCCTCTGAACGTAGTCAACGAGAAGATTTACATCTTCCTCTGGTTCTGGTT 146 >seq671859 Length=2159 Score = 77.0 bits (84), Expect = 8e-11 Identities = 130/186 (70%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 3344 GAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGG 3403 |||| ||||| | | | ||| ||| || || |||||||||||||| || || | | Sbjct 1050 GAGTTTTTCCTAAAGTAACTAAATGCACCTTCCACAAATACGGTCCATCCGGTACGGTAC 1109 Query 3404 AAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTT 3463 | || | ||| || | || | | || ||| | |||||||||||||||||| | | Sbjct 1110 AGAAATTCGACGGCTTGTGTGTTTTACCATTGAATATCGTCAACGAGAAGATCTACGTGT 1169 Query 3464 TCCTCTGGTTCTGGTTCTACG-TGCTAGCCATCATCAGCGGTATCGTTGTTCTGTACCGC 3522 |||||||||| ||||| || | | ||| | ||| | || || ||| | | | |||||| Sbjct 1170 TCCTCTGGTTTTGGTT-TATGATACTATCTATCCTGAGTGGAATCTCTTTGTTATACCGC 1228 Query 3523 ATTGCT 3528 || ||| Sbjct 1229 ATGGCT 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12388147375500