Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq94122 138 4e-29 seq213449 127 7e-26 seq140447 127 7e-26 seq182454 113 2e-21 seq45320 93.3 1e-15 seq137337 78.8 3e-11 seq12331 78.8 3e-11 >seq94122 Length=2668 Score = 138 bits (152), Expect = 4e-29 Identities = 171/239 (72%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 3933 TTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTT 3992 || |||| |||||||| ||||||| ||| |||| | || ||||| ||||| ||||| Sbjct 787 TTTTTTTTTGCCCTCCGGGCGGAAAGTGGCGTCTTTTGTCCCACTGCGTTAAACTAAGTT 846 Query 3993 GCCACATTCCGGCTACGTCGGGTAGAAAAA-TAGTGTACATACCTCGGCCAGAAAAAAGT 4051 ||| | ||||| || |||||| || ||||| |||| |||| ||| || || ||||| Sbjct 847 GCCGCTTTCCGCCTTCGTCGGATAAAAAAAATAGTATACAGCCCTTGGAAAGTAAAAAAG 906 Query 4052 AAAGCCTCAGACCACATGTTTGTTTggnnnnnNNNNNNNNNNNNNNNNTCGGCCAACAGT 4111 ||| ||||||| |||||||||||| ||||| |||| | Sbjct 907 AAAACCTCAGATCACATGTTTGTT---------GACCTCGGCTTCGCCTCGGCTAACAAT 957 Query 4112 TACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATATACTATTCTT 4170 ||||||||| ||||| ||||| ||||||| || || | | ||||||||||||||||| Sbjct 958 TACATGTGAACTGAGGCTTTTCTTATTTTCCTTCCCGAGGGGTGTAATATACTATTCTT 1016 >seq213449 Length=654 Score = 127 bits (140), Expect = 7e-26 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| |||||||| ||||||| ||||||||| | || ||||| ||||| |||||||| Sbjct 290 TTTTTTGCCCTCCGGGCGGAAAGTGGCAACTTTTGTCCCACTGCGTTAAACTAAGTTGCC 231 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 | ||||| || |||||| || ||||||||| |||| ||| || || ||||| ||| Sbjct 230 GCTTTCCGCCTTCGTCGGATAAAAAAATAGTATACAGCCCTTGGAAAGTAAAAAAGAAAA 171 Query 4056 CCTCAGACCACATGTTTGTT 4075 ||||||| |||||||||||| Sbjct 170 CCTCAGATCACATGTTTGTT 151 >seq140447 Length=1986 Score = 127 bits (140), Expect = 7e-26 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 3933 TTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTT 3992 || |||| |||| ||| | ||||||| ||||||||| | || ||||| ||||| ||||| Sbjct 912 TTTTTTTTTGCCTTCCGTGCGGAAAGTGGCAACTTTTGTCCCACTGCGTTAAACTAAGTT 971 Query 3993 GCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTA 4052 ||| | ||||| || |||||| || ||||||||| |||| ||| || || ||||| | Sbjct 972 GCCGCTTTCCGCCTTCGTCGGATAAAAAAATAGTATACAGCCCTTGGAAAGTAAAAAAAA 1031 Query 4053 AAGCCTCAGACCACATGTTTGTT 4075 || ||||||| |||||||||||| Sbjct 1032 AAACCTCAGATCACATGTTTGTT 1054 >seq182454 Length=1296 Score = 113 bits (124), Expect = 2e-21 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| |||||||| ||||||| |||| ||| | || ||||| ||||| |||||||| Sbjct 889 TTTTTTGCCCTCCGGGCGGAAAGTGGCATTTTT-GTCCCACTGCGTTAAACTAAGTTGCC 947 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 | ||||| || |||||| || ||||||||| |||| ||| || || ||||| ||| Sbjct 948 GCTTTCCGCCTTCGTCGGATAAAAAAATAGTATACAGCCCTTGGAAAGTAAAAAAGAAAA 1007 Query 4056 CCTCAGACCACATGTTTGT 4074 ||||||| ||||||||||| Sbjct 1008 CCTCAGATCACATGTTTGT 1026 >seq45320 Length=1102 Score = 93.3 bits (102), Expect = 1e-15 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 3960 GGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGGGTAGAA 4019 ||||||||| | || ||||||||||| |||||||| | ||||| || |||||| || || Sbjct 615 GGCAACTTTTGTCCCACTGCGCTAAACTAAGTTGCCGCTTTCCGCCTTCGTCGGATAAAA 556 Query 4020 AAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCA 4065 ||||||| |||| ||| || || ||||| ||| ||||||| || Sbjct 555 AAATAGTATACAGCCCTTGGAAAGTAAAAAAGAAAACCTCAGATCA 510 >seq137337 Length=846 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 4100 TCGGCCAACAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAAT 4159 |||||||||| |||||||||||||||| ||||| ||||||| || || | | |||||| Sbjct 465 TCGGCCAACAATTACATGTGATCTGAGGCTTTTCTTATTTTCCTTCCCAAGGGGTGTAAT 406 Query 4160 ATACTATT 4167 |||||||| Sbjct 405 ATACTATT 398 >seq12331 Length=1233 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 4100 TCGGCCAACAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAAT 4159 |||||||||| |||||||||||||||| ||||| ||||||| || || | | |||||| Sbjct 66 TCGGCCAACAATTACATGTGATCTGAGGCTTTTCTTATTTTCCTTCCCAAGGGGTGTAAT 125 Query 4160 ATACTATT 4167 |||||||| Sbjct 126 ATACTATT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17454582007275