Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq51755 241 1e-58 seq608441 147 2e-30 seq26808 125 6e-24 >seq51755 Length=2487 Score = 241 bits (266), Expect = 1e-58 Identities = 679/1023 (66%), Gaps = 40/1023 (4%) Strand=Plus/Plus Query 20400 TGAAAACAATAAACGTTTCGAGAAGCGTACCGATAAAATCATTGCTGCATATTTTGTAGA 20459 ||| || ||||||| ||| || || | | | ||| | | | || || || || || Sbjct 948 TGAGAAAAATAAACCCTTCAAGCAGACTTCGGGAAAAGTTGTGGGCGCCTACTTCGTCGA 1007 Query 20460 ATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTTCCCAATTTGTCTCA 20519 ||||||||| ||||||||| | || ||||| ||| | || ||||| || || |||| Sbjct 1008 ATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGACCGCATCCCGGTTCCGAACCTGACTCA 1067 Query 20520 TCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAACGAC-GCGTTAAAGT 20578 | |||| || ||||| | || ||||| || || ||||| ||||| ||| | | |||| Sbjct 1068 TTTGCTTTACGGCTTCATCCCGATTTGTGGTGGTGATGGCATCAATGACAGTTTGAAAGA 1127 Query 20579 TGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGGCCGAGATAATTTTA 20638 | || | |||| | ||| ||||| ||||| ||| ||||| || | || | Sbjct 1128 AATTGAAGGC----AGTTTTCAAGCATTGCAGCGTTCATGCAGCGGCCGTGAAGACTTCA 1183 Query 20639 AAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAAAGGAGTATCCTCTT 20698 | ||| | || |||||||| ||||| || || ||||| || ||||| ||| |||| || | Sbjct 1184 AGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAGCCTCAAAAGGGATTATCGTCCT 1243 Query 20699 GGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAAACTGGCGTATCCTC 20758 ||||||| || |||||||| ||||| || ||| ||||| ||||| ||| || || Sbjct 1244 GGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAAGCGAATACTG 1303 Query 20759 ATCTTAAAG-TGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCCGTTTTATCATATG 20817 | |||||| | |||||||||| || || ||||| || ||||||| || | || | | Sbjct 1304 GT-TTAAAGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCT-TCTTCTT 1361 Query 20818 CA-CGATCCGATCGTACGCCAAGTTTTCATCGATTCTGTGGAAGAGTTTTTGTTGACGTG 20876 || |||| | | || | |||| | | || ||| |||| || | || || Sbjct 1362 CACCGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCGTGAAAGACTTCCTCCAAACCTG 1421 Query 20877 GAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGCAAAGGTGCGAATCC 20936 ||| ||||| || || || || || || |||||||| || || |||||||| || || || Sbjct 1422 GAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCC 1481 Query 20937 GAACGTGGGCGATCCCGAACGCGATCGAGAAACGTATACGCTTTTACTTC----AAGAGC 20992 || | || | ||| || || || | ||||||| || | || |||| Sbjct 1482 TGACCTCGGTGGTCCTAAAGACG-----GAGATGTATACG--TTCAGCTCATGAAAGAAT 1534 Query 20993 TTCGTTTGCGATTGGACGCACTCGGCGTC-AAAACTAACAGATACTACGCCCTAACTTCA 21051 | ||| ||||| | || |||| | | ||| ||| |||| || || || Sbjct 1535 TACGTCAAATGTTGGATGAGCT-GGCGGCTGAGACTGGTAGAACTTACGAGCTGACCTCT 1593 Query 21052 GCTGTAAGTGCGGGTAACGACAAGATCGCCGTAGTAAATTACACCGAAGCGCAAAAGTAC 21111 || | ||||| ||| ||||||||| || || || |||| ||||| || |||||| Sbjct 1594 GCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGAAGCCCAGAAGTAC 1653 Query 21112 TTGGATGTAATATTTT--TAATGACGTACGACTTTAAAGGCTCATGG---AGCAACACGG 21166 |||| | ||||||| | |||| |||||||| || || | ||| | | |||| Sbjct 1654 ATGGA--TCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTCTAACGACAC-- 1709 Query 21167 AACTCGGACATCACACCGCTTTGTTTGCGCCAACTTGGCGTCCCGACGAACCCTATTGTG 21226 ||||||||||| |||||| | | || || ||||| |||| | ||| | || Sbjct 1710 -TCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCAAAGGAAACTTACACCA 1768 Query 21227 CCGACCGCGCCGTA-GAACTA-ATGTTGAATCAAAACGTGCCCGCCGGCAAGATAGCGCT 21284 ||||| || ||| | || || ||| ||| || || || ||| | | | Sbjct 1769 CCGACTTCG--GTATCAGGTATCTGCTGACCCAAGGTGTTCCGCCCAAAAAGCTGGTTGT 1826 Query 21285 AGGTGTGGCCATGTACGGCCGCGGTTGGACAGGTGTGGTCA--GCGACAATGACGACAAT 21342 ||||| || |||||||| || || |||||||| || ||| | |||||||||||| Sbjct 1827 CGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGT--TCATGACTACAATGACGACATA 1884 Query 21343 CCATTTTTGGGCGTCGCTACCGGCCCCGTGCCTGGCACGTGGGAAGCGGGTGTTGTAGAT 21402 || || || || |||| ||||| || || || ||| | | || || || ||| Sbjct 1885 CCGTTCACCGGAGTAGCTAATGGCCCAGTTAAGGGAACTTGGCAGGACGGCGTGGTGGAT 1944 Query 21403 TAT 21405 ||| Sbjct 1945 TAT 1947 >seq608441 Length=509 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||||||| | ||||| |||||||||||||| ||| Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCA 445 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || ||||| || || ||||||||||| |||||||| ||| ||| |||| Sbjct 444 GCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTT 385 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||| || | || |||||| || | || | ||||| || || |||||| Sbjct 384 ACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTT 325 Query 114366 TTTACAAAAATCTGCATGG 114384 || |||||||||||||||| Sbjct 324 TTAACAAAAATCTGCATGG 306 >seq26808 Length=8541 Score = 125 bits (138), Expect = 6e-24 Identities = 175/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 114139 ATTACCATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTT 114198 |||| ||||| | |||| || | ||||||||||||||||| | || |||||||| | Sbjct 7624 ATTAAAATTTATAT-TACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCT 7566 Query 114199 GAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGAC 114258 | || || || || | ||| || |||||| | ||||||||| || ||||||||| Sbjct 7565 GGATATTATAGTCTGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGAC 7506 Query 114259 GCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGG 114318 | |||||||| || ||||| ||||| ||||| ||| || ||| | | ||| | | Sbjct 7505 GTTGTTGGTCTGGCGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAG 7446 Query 114319 TGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 114378 |||||| | ||| || |||| || | || || || || || ||||| || || |||| Sbjct 7445 TGTCGGAAGCTTCCACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCT 7386 Query 114379 GCAT 114382 |||| Sbjct 7385 GCAT 7382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416688824349756