Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq26808 156 1e-32 seq608441 114 3e-20 seq162377 96.9 8e-15 >seq26808 Length=8541 Score = 156 bits (172), Expect = 1e-32 Identities = 177/236 (75%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | || | ||||| ||| |||||| |||||||||||||| | || ||||| Sbjct 7599 AGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAAAGAGTGCGG 7540 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || |||||||||||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 7539 CCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGG---TCTGGCGGAATACCT 7483 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || || || ||||| ||||| || ||||| |||| ||| | ||| || || | Sbjct 7482 TCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAAT 7423 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTAATA 288488 || || |||||||| || || || |||||||||||||||||| ||||| | |||| Sbjct 7422 GTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGTGTTACTAAAATA 7367 >seq608441 Length=509 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || || |||| | || ||||||||||| | |||||| || ||||| Sbjct 499 TTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCGAA 440 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| || |||| || || || ||||| || || ||||| ||||| || Sbjct 439 AATCAGTCGCTGCTG---ATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTAC 383 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||||| | ||| | ||| ||||| | || || || || || || ||||| || Sbjct 382 ATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTT 323 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 322 AACAAAAATCTGCAT 308 >seq162377 Length=1555 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 ||||||||| || ||||| ||||| ||||| || || || | ||| | ||||||||| Sbjct 224 TCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCGGATGCTTCTACTTC 165 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||||| ||||||||||||||||| || ||||| ||||||||| Sbjct 164 CAATGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAGATCTGCATT 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1169483776240014