Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq51755 206 3e-48 seq237220 196 5e-45 seq608441 140 3e-28 seq162377 82.4 8e-11 >seq51755 Length=2487 Score = 206 bits (228), Expect = 3e-48 Identities = 625/965 (65%), Gaps = 3/965 (0%) Strand=Plus/Plus Query 27464 GTCGTCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGTAATTTTGCCGCGGACCGC 27523 || || | ||| ||||| ||||||||||| ||||| | || || ||| ||||||| Sbjct 985 GTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGACCGC 1044 Query 27524 GTACCGGCGCCCAACCTGTCACATTTACTATACGGGTTCGTGCCGATATGCGGCGGCGAC 27583 | |||| || |||||| | ||||| || ||||| ||| | ||||| || || || || Sbjct 1045 ATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGTGAT 1104 Query 27584 GGCATCAACGACAGCCTTAAAACTATTCCGGGTAGTTTCGAAGCGTTGCAAAAGTCGTGC 27643 |||||||| ||||| | ||| ||| || ||||| |||| ||||| || ||| Sbjct 1105 GGCATCAATGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCATGC 1164 Query 27644 GCGGGTCGTGAAAACTTTAAAGTGGCCATTCACGATCCGTGGGCTGCATTGCAAAAACCA 27703 || |||||| |||| || || | || |||||||| ||||| || |||| || || Sbjct 1165 AGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAGCCT 1224 Query 27704 CAAAAAGGCGTTTCGGCTTGGACGGAACAATACAAAGGTAATTTTGGACAGTTAATGGCG 27763 ||||| || | ||| | |||| || | ||||||||||| || || ||| | ||| | Sbjct 1225 CAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAG 1284 Query 27764 ATAAAGCGTGCAAACCCGCATTTAAAAATTCTACCGTCCATAGGAGGGTGGACGCTGTCG 27823 | || | || || | |||||| || |||| || || || || ||||| || | Sbjct 1285 TTGAAACAAGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATTGGCC 1344 Query 27824 GATCCATTTTACTTTTTTCACGACGCTGGCAAACGCGCCACATTCGTCGAATCGGTTCGC 27883 ||||| || | ||| || ||| ||| || | | ||||| | || || Sbjct 1345 GATCCCTTCTTCTTCTTCACCGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCGTGAAA 1404 Query 27884 GAATTTCTGCAAACTTGGAAATTTTTCGACGGCGTGGACATCGATTGGGAATTTCCTGGC 27943 || || || ||||| ||||| || ||||| || || || || |||||||| || |||||| Sbjct 1405 GACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCCTGGC 1464 Query 27944 GGTAACGGCGCAAACCCACTGTTAGGCGATCCCCAACGAGACGGTTTAGTGTATGTGGTG 28003 || || ||||| ||||| | || | ||| | |||||| || || || | Sbjct 1465 GGCAAAGGCGCTAACCCTGACCTCGGTGGTCCTAA---AGACGGAGATGTATACGTTCAG 1521 Query 28004 TTGTTGCGCGAACTTCGCGATATGCTCGATCAACTCGAACACCACACGGGCCGGCAATAC 28063 | || ||| | || | ||| | ||| | || | | || || | ||| Sbjct 1522 CTCATGAAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACTGGTAGAACTTAC 1581 Query 28064 GAACTGACAAGTGCAATCGGCGCTGGCTACGACAAAATTGAGGTAGTTGATTACAACGAA 28123 || ||||| ||| ||| | || || | ||||| || | || || | ||||| ||| Sbjct 1582 GAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGAA 1641 Query 28124 GCGCAATCGTATTTGGACAAAATCTTTTTAATGAGTTATGATTTTAAAGGCGCTTGGTCC 28183 || || ||| |||| | || || | |||||||| || || || || || ||||| Sbjct 1642 GCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTCT 1701 Query 28184 AACTCGGATTTGGGCCATCAAACCGCTTTGTATGCGCCCGATTGGAAACCCGACGAGCGG 28243 ||| | | || ||||| |||||| | || || || ||||| || | || Sbjct 1702 AACGACACTCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCAAAGGAAACT 1761 Query 28244 TATACGACCGATTTTGCGGTGCGCTCGTTGCTTCTTCAAAAAGTACGTTCCGAAAAAATC 28303 || || ||||| || | | | | |||| ||| || | || |||| | Sbjct 1762 TACACCACCGACTTCGGTATCAGGTATCTGCTGACCCAAGGTGTTCCGCCCAAAAAGCTG 1821 Query 28304 GTGATCGGTGTGGCAATGTACGGTCGCGGTTGGAGTGGCGTATCGGAATATTTAAACGAT 28363 || ||||||| || |||||||| || || |||| || || || || |||| Sbjct 1822 GTTGTCGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGTTCATGACTACAATGACGAC 1881 Query 28364 AATCCCTTTACCGGCATCGCCACAGGCCCGGTGCCCGGCACTTGGGAAGACGGCGTCGTA 28423 | || || ||||| | || | ||||| || || |||||| | |||||||| || Sbjct 1882 ATACCGTTCACCGGAGTAGCTAATGGCCCAGTTAAGGGAACTTGGCAGGACGGCGTGGTG 1941 Query 28424 GATTA 28428 ||||| Sbjct 1942 GATTA 1946 >seq237220 Length=3575 Score = 196 bits (216), Expect = 5e-45 Identities = 1112/1783 (62%), Gaps = 18/1783 (1%) Strand=Plus/Minus Query 153670 ATTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGC 153729 |||| || || ||||| ||||||| || || ||||| ||||||||||||||||| | Sbjct 2473 ATTTATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCC 2414 Query 153730 CGGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGG 153789 | ||||| ||||| |||||| | | | || | |||||| | || || | | Sbjct 2413 CTGTTTTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCG 2354 Query 153790 GCTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCG 153849 ||| || | | | ||||| || || || ||||| || ||||| || ||||| || | Sbjct 2353 GCTCAGCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAG 2294 Query 153850 CCATGTCAATCAA-GTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATG 153908 |||| | || ||||| |||| |||||||| || || || || | | || || Sbjct 2293 CCATTTGTATTGTTGTTTTGACTGAA-ATTTCCCAAACTGTCTTATATAAGTCTCGTATT 2235 Query 153909 TCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGC 153968 || ||||| | || || || || | | || ||||||| ||| | Sbjct 2234 TCTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTC 2175 Query 153969 ATGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACT 154028 || | || || | |||| | | | ||| || ||| || || || | ||| Sbjct 2174 ATTTCCTCATCCCATAAATCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACT 2115 Query 154029 TGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGAT 154088 ||||| || || | || || || | ||| | ||| ||||| || || || ||| Sbjct 2114 TGAAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGAT 2055 Query 154089 TCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAG 154148 || || || ||||| || || ||||| | || |||||||| || | ||| | ||| Sbjct 2054 TCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAA 1995 Query 154149 TTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTA 154208 || || | || || || |||||| ||||||| | ||| | ||| || | || Sbjct 1994 TTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTT 1935 Query 154209 GGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAA 154268 || | |||||||| ||||| || || | ||| | ||| || || || | || Sbjct 1934 GGATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCGTAT 1875 Query 154269 CTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTAT 154328 | |||| || | | || ||| || || ||||| |||||||| || ||||||| Sbjct 1874 GTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGTAA 1815 Query 154329 ACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCC 154388 | ||||| ||||||| |||| | | |||| ||||||||| || || | | Sbjct 1814 ATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAACGC 1755 Query 154389 AATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAA 154448 | || | ||||||||| || || ||||||| || | ||||| |||| || | ||| Sbjct 1754 ATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAAAA 1695 Query 154449 TTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANNNNN 154508 || |||| ||| || || | |||||||||||| | || || |||||||| | Sbjct 1694 TTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAATTT 1635 Query 154509 NNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCAAACACTCCGCT---TTTA 154565 || |||||| | | | | | ||| Sbjct 1634 TCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTTATCATTA 1575 Query 154566 ATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTG 154625 | ||| ||||| | ||| || |||||||| || || | ||| ||| | | Sbjct 1574 ACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAGATGTA 1515 Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 ||| || ||||| | ||||| ||||| ||| |||||| || | ||||||||||| Sbjct 1514 AATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTGATTA 1455 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 ||| | || |||| ||||| | || ||||| || || || || || ||||| | | Sbjct 1454 CTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTGAGCT 1395 Query 154746 TCAATAATTG--TGCGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGC 154803 || || |||| | | ||| |||| | || ||||| | |||||| |||||| Sbjct 1394 TCTATTATTGCTTTCCAAA-GTACTT-GTGCTCTTACTTGTTTAATAAATCTATTTTCTT 1337 Query 154804 TCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGAC 154863 | ||||| ||| || | |||||| ||| | | ||| | || || || | Sbjct 1336 TTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGC 1277 Query 154864 AGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAAT 154923 | || |||||||| | | ||| | | | | || || | |||||| || | || Sbjct 1276 AATCGTGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAAGAT 1217 Query 154924 CCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTC 154983 | || | |||||| || || || | || | || | ||||| || ||||| Sbjct 1216 CAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTT 1157 Query 154984 GCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCG 155043 |||||||| || || ||| |||| ||||| ||||| || |||||||| || || | | Sbjct 1156 TCTTTAAATCTAAGAATTCAAATATATCGGCATGCCATGGTTCTAAATAGACTGCAAAAG 1097 Query 155044 CGCCTTTGCG---TTTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCA 155100 | || ||| || ||||||||||| || | | | ||||||||| || || | Sbjct 1096 CACCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAACTCGTA 1037 Query 155101 ACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCAC 155160 ||| |||| | | || | | | || || || || ||| | || ||| Sbjct 1036 ACATTGGTACAAGACCATTTGACACACCATTTGTTCCTGCTATATAAGTACCTTTAGC-- 979 Query 155161 GCGCTTTA---TGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGT 155217 | | || || |||| || || | || || | |||||||||| ||||| | Sbjct 978 -CCTTATACAGTGGACATGGACACCAATTCCACCTGCAGATTTAGATATCAAAGCACACT 920 Query 155218 CCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACG 155277 | || || ||||| || |||| ||||| || ||||||| | | | ||||| | Sbjct 919 GCTTTAAGGTATCGTAAATCCCTTCTATGCTATCATCTTTCATAGCTATTAGAAAACATG 860 Query 155278 AAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACA 155337 | |||| ||||| | || | || | ||||| ||||| || || || || || Sbjct 859 ACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAAT 800 Query 155338 TTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATAC 155397 ||| | | ||| || || || | ||||| || ||||| || ||| || || | Sbjct 799 ATTTCTCAGAAAGTAAATTATATGTATTTATGGCTGCATCAATATCTTCACCATGAATTC 740 Query 155398 CGATCGCCACGCGCATCAGCATGTGTTGAATGCGCTCCGCAAC 155440 | || | ||| | ||||| ||| |||||| || || ||||| Sbjct 739 CAATGGACACTCTCATCAACATATGTTGAGGTCGTTCAGCAAC 697 >seq608441 Length=509 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| || ||||||||||| | | || || |||||||||| || || || Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCA 445 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || |||||||| || |||||||| || ||||| ||||| |||||| ||| Sbjct 444 GCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTT 385 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| ||| || ||||||| |||| ||| || || || | |||| Sbjct 384 ACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTT 325 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||| ||||| Sbjct 324 TTAACAAAAATCTGCAT 308 >seq162377 Length=1555 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| ||||| |||| | ||||| ||||| Sbjct 103 AGTACAAGATGGAGTGTGGATTCTTTTTGAATATTGTAGTCTGACAATGTGCGTCCGTCT 44 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 || ||||||||||| ||| | ||||| || || || || |||| Sbjct 43 TCCAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGATCTGGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495442081483720