Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq51755 248 9e-61 seq608441 105 7e-18 seq26808 100 3e-16 seq255931 95.1 1e-14 >seq51755 Length=2487 Score = 248 bits (274), Expect = 9e-61 Identities = 364/514 (71%), Gaps = 1/514 (0%) Strand=Plus/Plus Query 27991 CGAGAAAA-TTGTGGCCGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCG 28049 || ||||| |||||| |||||| |||||||| ||||||||||||| | |||| |||| Sbjct 977 CGGGAAAAGTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCG 1036 Query 28050 TCGACAAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCG 28109 | ||| | || | || |||||| | || ||||| ||||| ||| | ||||| || | Sbjct 1037 TGGACCGCATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTG 1096 Query 28110 GCGGCGACGGCATAAACGACGCCCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGC 28169 | || || ||||| || ||| | || || |||||||| | || |||||| Sbjct 1097 GTGGTGATGGCATCAATGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGC 1156 Query 28170 GCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTC 28229 | || ||| ||| || | ||||||||||| | ||||||||||||||||| ||| | | Sbjct 1157 GTTCATGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGC 1216 Query 28230 AGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAAT 28289 ||||||| |||||||| | || | ||||||||||| |||||||| ||||| ||||| Sbjct 1217 AGAAGCCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGC 1276 Query 28290 TGATGAGCGTCAAATTAGCCAATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGA 28349 ||||| | ||| ||| ||| | || ||| | | | ||||| || ||||||| Sbjct 1277 TGATGCAGTTGAAACAAGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGA 1336 Query 28350 CGCTGTCGGACCCATTCTTTCACATGCACGACGCGACCGTGCGCCAAACGTTCATCGATT 28409 | || | || || ||||| | | ||| ||| ||| | ||| | | | Sbjct 1337 CATTGGCCGATCCCTTCTTCTTCTTCACCGATAAAACCAAGCGTGACCGTTTCGTTGGCT 1396 Query 28410 CCGTCGTGGACTTTCTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGT 28469 |||| ||||| || | ||||||||||||||||| || ||||| || |||||||||| Sbjct 1397 CCGTGAAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGT 1456 Query 28470 TTCCGGGCGGCAAAGGAGCCAATCCCGATGTCGG 28503 | || ||||||||||| || || || || |||| Sbjct 1457 TCCCTGGCGGCAAAGGCGCTAACCCTGACCTCGG 1490 >seq608441 Length=509 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || |||||||| ||| | ||||| ||| || |||||||| || | Sbjct 501 GATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCG 442 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || || ||||| || || ||||| || || |||||||| ||| |||||| ||||| Sbjct 441 AAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCT-TGAATTTTTGCTTTTAC 383 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||| || | | || || || | || | ||||||||||| |||||||| Sbjct 382 ATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTT 323 Query 138600 TACAAAAATCTGCATGG 138616 |||||||||||||||| Sbjct 322 AACAAAAATCTGCATGG 306 >seq26808 Length=8541 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||||||||| | | || || || || || || ||||| | ||| || || Sbjct 7594 CAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAAAGAGTGCGGCCATC 7535 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | ||||||||||| | |||| ||||| |||||||| || || |||||||| ||||| Sbjct 7534 TTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTC 7475 Query 138522 GGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||| | ||| | | ||| | ||||||| | |||||||| | || | | Sbjct 7474 -TTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAATGTAATGG 7416 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || || ||||| || || |||||||| Sbjct 7415 TCTTCCCCGTAAGGGTTTTGACGAATATCTGCAT 7382 >seq255931 Length=537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 28263 AGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAATCCGCACTTGA 28322 |||| |||||||| ||||| ||||| ||||| | ||| ||| ||| | ||| | Sbjct 1 AGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAAGCGAATACTGGCTTAA 60 Query 28323 AGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTCTTTCACATGCACGACG 28382 || | | | ||||| || |||||||| || | || || ||||| | | ||| Sbjct 61 AGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCTTCTTCTTCACCGATA 120 Query 28383 CGACCGTGCGCCAAACGTTCATCGATTCCGTCGTG---GACTTTCTGCTGACCTGGAAGT 28439 ||| ||| | |||| ||| | || |||| ||||| || | |||||||||| Sbjct 121 AAACCAAGCGTGAT-CGTT--TCGTTGCCTCCGTGAAAGACTTCCTCCAAACCTGGAAGT 177 Query 28440 TCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGAGCCAATCCCGATG 28499 ||||||| || ||||| || || |||||||| || ||||||||||| || || || || Sbjct 178 TCTTCGATGGTGTCGATATTGACTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCCTGACC 237 Query 28500 TCGG 28503 |||| Sbjct 238 TCGG 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492088132245360