Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq51755 255 6e-63 seq255931 141 9e-29 seq608441 114 1e-20 >seq51755 Length=2487 Score = 255 bits (282), Expect = 6e-63 Identities = 543/801 (68%), Gaps = 15/801 (2%) Strand=Plus/Plus Query 22307 AAAATTGTCGCCGGCTATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGAC 22366 ||| |||| | || ||| || ||||| ||||| ||||| | | | |||| |||| ||| Sbjct 982 AAAGTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGAC 1041 Query 22367 AAGGTGCCCGTGCCGAACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGA 22426 | || || ||||||||| | |||||||| ||||| ||| | || || || || || Sbjct 1042 CGCATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGT 1101 Query 22427 GACGGCATCAACGACGCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCG 22486 || |||||||| ||| ||||| | || || || | || ||||| || || Sbjct 1102 GATGGCATCAATGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCA 1161 Query 22487 TGCGTCAATAGAGCCGATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAA 22546 ||| | | | || |||||||| | || |||||||| ||||||||| | || || Sbjct 1162 TGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAG 1221 Query 22547 CCTCAAAAAGGCGTGTCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATG 22606 |||||||| || | ||||| |||||||| || |||||||| ||||| || || ||||| Sbjct 1222 CCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATG 1281 Query 22607 GCAGT-GAAAAGAGCGAATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTT 22665 |||| |||| ||||||| || | | || | ||| | ||||| || || ||||| || Sbjct 1282 -CAGTTGAAACAAGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATT 1340 Query 22666 GTCCGATCCGTTTTATCATATGCAC-GACAAGAACGTGAGACAAATTTTCATCGATTCGG 22724 | ||||||| || | || | | ||| || || | | | | | |||| | | || | Sbjct 1341 GGCCGATCCCTTCT-TCTTCTTCACCGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCG 1399 Query 22725 TGGAAGAGTATTTGATCACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTC 22784 || |||| | | || ||||||||||| || || |||||||||||||||||||| | Sbjct 1400 TGAAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCC 1459 Query 22785 CCGGCGGCAAGGGGGCGAATCCTAACGTGGGCGATGCGGAACGCGACCGCGAAACGTACA 22844 | |||||||| || || || ||| || | || | | | || ||| || | ||| | Sbjct 1460 CTGGCGGCAAAGGCGCTAACCCTGACCTCGGTGGTCCTAAA---GAC--GGAGATGTATA 1514 Query 22845 CGCTC--CTCCTGAAAGAGCTCCGGCTGCGTTTGGACGCGCTCGGCGCTCGCACCAATCG 22902 || || ||| ||||||| | || | ||||| | ||| | ||| || | | Sbjct 1515 CGTTCAGCTCATGAAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACTGGTAG 1574 Query 22903 ATACTACGCTCTGACTTCGGCCGTGAGCGCGGGCAACGACAAGATCGCAATTGTAAATTA 22962 | |||| ||||| || ||| | || || || ||||||||| | |||| || || Sbjct 1575 AACTTACGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTA 1634 Query 22963 TACCGAAGCGCAAAAGTACTTGGACACGATATTTT--TAATGAGCTACGATTTTAAAGGA 23020 | ||||| || |||||| ||| | ||||||| | ||||| ||||| || || || Sbjct 1635 CAAGGAAGCCCAGAAGTACATGG--ATCATATTTTCGTCATGAGTTACGACTTCAAGGGT 1692 Query 23021 GCGTGGAGCAACACCGAGCTGGGTCACCAGACGGCGCTCTTCGCGCCCACCTGGCGTCCC 23080 || ||| ||| | || || || ||||| || || | ||| || | ||| |||| Sbjct 1693 GCCTGGTCTAACGACACTCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCA 1752 Query 23081 GACGAACCCTACTGCGCCGAC 23101 | ||| | ||| | ||||| Sbjct 1753 AAGGAAACTTACACCACCGAC 1773 >seq255931 Length=537 Score = 141 bits (156), Expect = 9e-29 Identities = 358/532 (67%), Gaps = 17/532 (3%) Strand=Plus/Plus Query 22577 CCGTACAAAGGCAACTTTGGTCAATTGATGGCAGT-GAAAAGAGCGAATCCTCATCTCAA 22635 || |||||||| ||||| || || ||||| |||| |||| ||||||| || || || Sbjct 3 CCCTACAAAGGTAACTTCGGGCAGCTGATG-CAGTTGAAACAAGCGAATACTGG-CTTAA 60 Query 22636 AG-TGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGCAC-GAC 22693 || | ||| | ||||| || || ||||| ||| ||||||| || | || | | ||| || Sbjct 61 AGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCT-TCTTCTTCACCGAT 119 Query 22694 AAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAAGTTC 22753 || | | | | | |||| | | || ||| |||| | | || ||||||||| Sbjct 120 AAAACCAAGCGTGATCGTTTCGTTGCCTCCGTGAAAGACTTCCTCCAAACCTGGAAGTTC 179 Query 22754 TTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCCTAACGTG 22813 || || || ||||||||||| |||||||| || |||||||| || || || ||| || | Sbjct 180 TTCGATGGTGTCGATATTGACTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCCTGACCTC 239 Query 22814 GGCGATGCGGAACGCGACCGCGAAACGTACACGCTC--CTCCTGAAAGAGCTCCGGCTGC 22871 || | | | || ||| || | ||| ||| || ||| |||| || | || | Sbjct 240 GGTGGTCCTAAA---GAC--GGAGATGTATACGTTCAGCTCATGAAGGAATTACGTCAAA 294 Query 22872 GTTTGGACGCGCTCGGCGCTCGCACCAATCGATACTACGCTCTGACTTCGGCCGTGAGCG 22931 ||||| | ||| | ||| || | || |||| ||||| || ||| | |||| Sbjct 295 TGTTGGATGAGCTGGCGGCTGAGACTGGTAGAACTTACGAGCTGACCTCTGCCATCAGCG 354 Query 22932 CGGGCAACGACAAGATCGCAATTGTAAATTATACCGAAGCGCAAAAGTACTTGGACACGA 22991 | || ||||||||| | |||| || || | ||||| || |||||| ||| || | Sbjct 355 CCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGAAGCCCAGAAGTACATGG--ACCA 412 Query 22992 TATTTT--TAATGAGCTACGATTTTAAAGGAGCGTGGAGCAACACCGAGCTGGGTCACCA 23049 |||||| | ||||| ||||| || || || || ||| ||| | || || ||||| Sbjct 413 TATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTCTAACGACACTCTCGGACACCA 472 Query 23050 GACGGCGCTCTTCGCGCCCACCTGGCGTCCCGACGAACCCTACTGCGCCGAC 23101 ||| || || | ||| || | ||| |||| | ||| | ||| | ||||| Sbjct 473 GACCGCTCTGTACGCTCCGTCTTGGAGTCCAAAGGAAACTTACACCACCGAC 524 >seq608441 Length=509 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||||||| | || || || || || ||||| ||| Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCA 445 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| | |||| |||||||||||| ||||| |||||||| |||| | ||| ||| ||| || Sbjct 444 GCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGT-CTTGAATTTTTGCTTT 386 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | ||| || | |||||||| | || | ||||| || || ||||| Sbjct 385 TACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGT 326 Query 127096 TTTTACAAAAATCTGCATGG 127115 ||| |||||||||||||||| Sbjct 325 TTTAACAAAAATCTGCATGG 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471501166627120