Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq237220 235 5e-57 seq26808 114 1e-20 seq608441 113 4e-20 >seq237220 Length=3575 Score = 235 bits (260), Expect = 5e-57 Identities = 509/753 (68%), Gaps = 15/753 (2%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || || ||| | ||||| || || || || || |||||| | | ||||| | || || Sbjct 1387 ATAATAGAAGCTCAAGTAGAGACTGGTACTCCATACATGTTATTTAAAGATTCATGTAAT 1446 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 || |||| ||||||| || || || || || ||||||||||| || ||| | ||||| Sbjct 1447 AGAAAAAGTAATCAGAAAAATTTAGGTACCATTAAATGTAGTAACCTGTGCACTGAAATA 1506 Query 123708 ATCGAAT--ACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA 123765 | |||| ||| | || ||| ||||||| || || || || ||||| ||| | | | Sbjct 1507 GTAGAATTTACATC--TGATGATGAAGTGGCAGTATGCAACTTAGCTTCTATTGCCCTAA 1564 Query 123766 ATCGTTGCGTC---GAAAACGGCGCTTTTAATTT--CCAAACGCTCAAACGCA-TAACAA 123819 || | || || ||| | | |||||| | ||| | ||| | | | || | Sbjct 1565 ATATGTTTGTTAATGATAACAAAACATATAATTTTGCGAAA---TTAAAAGAAGTTACTA 1621 Query 123820 AAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAG 123879 |||||||| | | |||||||| ||||| || || || |||| ||||||| | ||||| Sbjct 1622 AAACTGTAACAGAAAATTTGAATAAAATCATTGACGTAAATTATTATCCTGTTCCGGAAG 1681 Query 123880 CGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACG 123939 | || ||||| | || |||| | ||| | || ||||||| | || || | Sbjct 1682 CAAAAAAATCCAATTTTAGGCATCGACCTATTGGAATAGGTGTTCAAGGTCTTGCTGATG 1741 Query 123940 CGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAA 123999 | ||| | | |||| | || |||||||| ||||| | || ||| |||| Sbjct 1742 CTTTTATTTTAATGCGTTTACCTTACGAAAGTCCAGAAGCTATTAAACTAAATCAACAAA 1801 Query 124000 TAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAATTCAC 124058 || ||||| ||||| || || || || || || || || ||| | || ||||| | | Sbjct 1802 TATTTGAAACTATTTACTATGGAGCATTAGAAGCAAGTTGTGAATTAGCAGAAAAGT-AT 1860 Query 124059 GGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATG 124118 || | |||||||| |||| || ||||| || || | |||||| || |||||||| ||| Sbjct 1861 GGAGTGTACGAAACATACGAAGGGAGCCCTGCAAGTCTAGGTATATTACAGTACGAAATG 1920 Query 124119 TGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACG 124178 |||||| | || ||| |||| |||||||||| ||||||| || ||| | | | Sbjct 1921 TGGAATAAAAATCCAACAGATTTATGGGACTGGACTTCTTTAAAAAAAAACATTGCTAAG 1980 Query 124179 CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATT 124238 || || | || || || || ||| | || ||||| || || | || || || ||| Sbjct 1981 CATGGCCTTCGCAATTCTCTTTTGATAGCACCAATGCCCACTGCCTCAACAGCCCAGATT 2040 Query 124239 TTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTA 124298 |||||||| || ||||| || || || |||||| ||| | || |||| || ||| Sbjct 2041 TTAGGAAATAATGAATCTTTTGAACCTTTCACTTCTAATATTTATCAAAGACGTGTTTTA 2100 Query 124299 GCCGGCGATTTTCAAGTGATAAATCATCATTTG 124331 | || || |||||||| ||||||| |||||| Sbjct 2101 TCTGGAGAATTTCAAGTTGTAAATCACCATTTG 2133 >seq26808 Length=8541 Score = 114 bits (126), Expect = 1e-20 Identities = 171/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 45103 TTTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATAT 45162 ||||| ||| ||||| | || ||||| |||| ||| || || ||||| || ||||||| Sbjct 7617 TTTATATTA--CCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATAT 7560 Query 45163 TATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTG 45220 |||| || ||| | | | ||| || |||||||| || || | || | ||||| Sbjct 7559 TATAGTC--TGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTG 7502 Query 45221 CTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTC 45280 ||||| |||||||| ||||| || ||||||||||| ||||| ||| | ||||| Sbjct 7501 TTGGTCTGGCGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTC 7442 Query 45281 GGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || | |||| || || || || || ||||| || || || ||||| Sbjct 7441 GGAAGCTTCCACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCAT 7382 >seq608441 Length=509 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 45139 GCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTT 45198 |||| || ||||| || ||||| || |||||| | || || || | ||||| Sbjct 509 GCAGAGTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTT 450 Query 45199 TTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTT 45258 | || ||| | |||| ||| ||||| || || |||||||| ||||| |||||||||||| Sbjct 449 TCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTG 390 Query 45259 GTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTA 45318 ||| | ||||| ||| || || | |||||||| | || | ||||| || || | Sbjct 389 CTTTTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGA 330 Query 45319 GAGTTTTTACAAAAATTTGCAT 45340 ||||||| |||||||| ||||| Sbjct 329 GAGTTTTAACAAAAATCTGCAT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448201214633480