Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq51755 150 1e-31 seq608441 87.8 1e-12 >seq51755 Length=2487 Score = 150 bits (166), Expect = 1e-31 Identities = 791/1239 (64%), Gaps = 78/1239 (6%) Strand=Plus/Minus Query 5816 ATTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCA 5875 ||| || | ||| | |||||||| |||| | ||| || ||||| |||||||||||||| Sbjct 2184 ATTCCCTAGACCCATATTCATTGCGTTTAGGATATCCCCATTGTCAGCGTCTATTTCCCA 2125 Query 5876 CGCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGA--T 5933 || || | ||||| | || ||| || || || || || || | | ||||| | Sbjct 2124 AGCGAACAGTCCACCAAGCTTATTGTTCCTCACGTATTTCCCCTTCTCAATAACCGACCT 2065 Query 5934 TGATCGTTGTCGTACGTAACTAAATCAT------TATTATCGTAGACGTACGGAGATTGT 5987 || | | || || || || | || || || | |||||||||| ||| Sbjct 2064 TG--CATCATCATAGGTCACCAGGTCGCCGGTGGTAGGATTCCACACGTACGGAGCTTGG 2007 Query 5988 GCAATGTTATCATAGAATTGTAC----ACTTTC-----GTCGTACCTATTTACAATATCT 6038 | || |||||||| || |||| | ||| || | || ||| || || Sbjct 2006 GATATTTTATCATA--ATAGTACTGCCATGTTCCTGAAGTGATGCC-ATTCGTGATCTCC 1950 Query 6039 TTATAATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTA 6098 ||||||| | |||||| | ||| || || ||||| || | |||||| ||| || Sbjct 1949 CTATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTG 1890 Query 6099 AACGGATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCAC 6157 ||||| | | || | | | || ||| || || ||||||| ||||| |||||||| || Sbjct 1889 AACGGTATGTCGTCATTGTAGTC-ATGAACTCCTGTCCAGCCACGTCCGTACATAGCAAC 1831 Query 6158 ACCTACTACTAA---TTTAGTCGAATCGACATTTTGATTTAACA---ATCTGTTAATAGC 6211 ||| || || | ||| | || | ||| ||| | | || | ||| ||| | Sbjct 1830 ACCGACAACCAGCTTTTTGGGCGGA---ACACCTTGGGTCAGCAGATACCTG---ATACC 1777 Query 6212 AAAATGGGTTGTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAA 6271 || | ||| |||||| |||| || ||| || |||||||| || | || ||| Sbjct 1776 GAAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATG 1717 Query 6272 ACCCAAATTTTCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATC 6331 || | | | || | ||||| || || || || ||||| |||| || || |||| ||| Sbjct 1716 TCCGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATC 1657 Query 6332 GAGATAGCGTTGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGAT 6391 | || || || || | || | ||||| | ||| ||||| ||||||||| ||| Sbjct 1656 CATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGAT 1597 Query 6392 AGCGCTAGTTAGTT-GCAATCGTT-TACCTCTCtttttttCCAATTTGTTGAGCATTTCG 6449 || || || | | || ||| |||| ||| ||| | | | ||||| Sbjct 1596 GGCAGAGGTCAGCTCGTAA--GTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGA 1539 Query 6450 CGTAACTCCTTTAAAAGT--ATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCG 6507 ||||| || || | || | ||||| | | | || || | ||| || Sbjct 1538 CGTAATTCTTTCATGAGCTGAACGTATACATCTC-----CGTCTTTAG----GACCACCG 1488 Query 6508 ACG----GGTTGGCACCTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAA 6563 | | |||| || ||||| ||||| || ||||||||||| || ||||| || ||||| Sbjct 1487 AGGTCAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAG 1428 Query 6564 AATTTCCACGTTTCCAAAAATTCGCGCACACTATCAAC-AAACGTATTTCGTTT--TTCG 6620 || ||||| |||| | || || ||| |||| ||||| | || || || Sbjct 1427 AACTTCCAGGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGG-TCACGCTTGGTTTT 1369 Query 6621 ACGTCGTTTAACTGGTAAAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATT 6680 | ||| | || | | || |||||| | ||||| || || ||||| || || || Sbjct 1368 A--TCGGTGAAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATC 1311 Query 6681 GTTAAATCTGGATTGTGGCGCTTGAT----CGCCATTAACTGTCCAAAGTTTCCTTTGTA 6736 ||||| | | ||| |||||| | | ||| | ||| || ||||| |||||||| Sbjct 1310 TTTAAACCAGTATT----CGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTA 1255 Query 6737 CGGTTCGTTGTAGGCCTCGACACCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATG 6796 || ||||| ||| | | || ||||| || || || || || |||| ||| || Sbjct 1254 GGGCTCGTTCCAGGACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTG 1195 Query 6797 AATGGTTACTTTGAAATCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTCAAACGAACT 6856 || | || ||||| |||| |||||| ||| || ||||| || | ||| ||| Sbjct 1194 GATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAA---ACT 1138 Query 6857 GGGT---ATTTGTTGTTTAAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAA 6913 | | |||| || | || | || || | ||||| || |||||||| || || || Sbjct 1137 GCCTTCAATTTCTT--TCAAACTG-TCATTGATGCCATCACCACCACAAATCGGGATGAA 1081 Query 6914 CCCGTACAACAAATGTGTAAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATC 6973 ||||| | |||||| || || || |||| || || ||| |||| | | |||| Sbjct 1080 GCCGTAAAGCAAATGAGTCAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGG 1021 Query 6974 GTAAACACCCCATTCCACAAAGTAAGCGCCCACAACATT 7012 || || |||||||| || ||||| ||||||||||| || Sbjct 1020 ATACACGCCCCATTCGACGAAGTAGGCGCCCACAACTTT 982 >seq608441 Length=509 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || || || ||||||| || ||| | || || | ||||||||| | || Sbjct 499 TTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCGAA 440 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | ||||||||||| | || | ||| |||||||| |||||| ||| | | Sbjct 439 AATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATT 380 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| || || | | ||| || || || || || |||||||| || | |||||| || Sbjct 379 TTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTAAC 320 Query 39708 GAAGATCTGCATG 39720 || ||||||||| Sbjct 319 AAAAATCTGCATG 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344520777729329