Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq51755 212 6e-50 seq608441 116 4e-21 seq562919 107 2e-18 seq255931 102 8e-17 seq601675 100 3e-16 seq10425 84.2 2e-11 >seq51755 Length=2487 Score = 212 bits (234), Expect = 6e-50 Identities = 597/918 (65%), Gaps = 9/918 (1%) Strand=Plus/Minus Query 61800 GAACGGGTTGCCGTCCGCGTAGCCGGTCACGCCGGTCCAGCCGCGTCCGTACATGGCCAC 61859 |||||| || |||| |||| | || || |||||||| ||||||||||| || || Sbjct 1890 GAACGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAAC 1831 Query 61860 GCCGAGCACGATCTTGTCGGCGGGCACGCCCTGCGCTAACAGCTGACGCACCGCGTTGTC 61919 |||| || | ||| | || || || || || | | ||| | | | || ||| Sbjct 1830 ACCGACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCGAAGTC 1771 Query 61920 GGCGGTGTAGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGGCCCAG 61979 || |||||| | || | || | ||| ||||| ||||| || |||||||| || || || Sbjct 1770 GGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAG 1711 Query 61980 CTCGGTGGTGGACCACGCGCCCTTAAAGTCGTAGCTCATCaaaaaaaTGCGGTCGAGCGA 62039 | | | ||||| || ||||| |||||||| ||||| | ||||| | || | | Sbjct 1710 AGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTA 1651 Query 62040 GCGGTGCGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGATGGCGCT 62099 || || | ||||| ||| || ||||||||| ||||| | |||||| Sbjct 1650 CTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGA 1591 Query 62100 GGTCAGCTCGTACGTCCTGTTGGTCTCGGTCTGCAGCTCGTCGAGCATGAGCNNNNNNNN 62159 |||||||||||| || || ||||| | | |||||| || | ||| | Sbjct 1590 GGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTC 1531 Query 62160 NNNNNNNNNNNNCGCGTACGTTTCGCGGTCGCGCTCCGCGTCGCCCAGCAGCGGGTTGGC 62219 |||| || | ||| | | | || || ||||| || Sbjct 1530 TTTCATGAGCTGAACGTATACATCTCCGTCT---TTAGGACCACCGAGGTCAGGGTTAGC 1474 Query 62220 GCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTCCACGTCTG 62279 ||| |||||||| || |||||||| || | || | || ||||| | |||||| || || Sbjct 1473 GCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTG 1414 Query 62280 CAGAAACTCGCGCGCCGACTCGACGAA-CG--CGCGCCGCGCGTTCGCGTCGTGCATATG 62336 || || || | | || | ||||| || | ||| | || || ||| | | | Sbjct 1413 GAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCG--GTGAAGAAG 1356 Query 62337 GTAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGTGCGGGTG 62396 | || ||||||| || |||||||| || || || || | | | | | Sbjct 1355 A-AGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTATT 1297 Query 62397 CGCTTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCACGCGGT 62456 ||||| || | ||||||||| |||||||| || ||||| |||||| |||| | | Sbjct 1296 CGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGA 1237 Query 62457 CACGCCCTTTTGCGGCTTTTGCACGGCCGCCCACGGGTCGTGCACCGCCAGTTTGAAGTC 62516 | |||||||| ||||| |||| ||||||||| || ||||| | | | |||||||| Sbjct 1236 TAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTC 1177 Query 62517 GTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTTGAGGCT 62576 || ||||| ||| || ||||||| || | || ||||| | || || | || Sbjct 1176 TTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAACT 1117 Query 62577 GTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGTGAGGTT 62636 ||| |||||||| || || || || ||||| | ||||||||| |||| ||| || ||||| Sbjct 1116 GTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTT 1057 Query 62637 GGGCACGGGCACCTTGTCGGCGGGAAACTCGCGTCCGTACACGCCCCACTCGACGAAATA 62696 || || || | ||| |||| |||| | ||||||||||| |||||||| || Sbjct 1056 CGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGTA 997 Query 62697 GGCGCCCACCACCTTGCC 62714 ||||||||| || || || Sbjct 996 GGCGCCCACAACTTTTCC 979 >seq608441 Length=509 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || |||||||| || | || ||||| ||| | Sbjct 308 ATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCT 367 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| |||||| | ||||||||||| ||||| | || || Sbjct 368 GATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 427 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || ||||| || || |||| || || | ||| |||||| Sbjct 428 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACAAC 487 Query 38424 ATCCAAAAGGAAGCGACGCTGC 38445 ||||| || ||| |||| |||| Sbjct 488 ATCCAGAAAGAATCGACTCTGC 509 >seq562919 Length=404 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||||||||| || || || ||||| || | || ||||| || || | |||| Sbjct 259 CCTCATCCCTGGAAATAAGCTCATTACTGAATGTGAGTCCTGGCATAAGACCCCTCTTTT 200 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| || ||||||||||| || || | || || || || || || | Sbjct 199 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAGAAAAATATTCCTTCTACAGCTGCAAAGG 140 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | | || || || || || ||||| |||||||| | || ||||| || | Sbjct 139 CAACAATTCTTTCACCAAATGTTGCAGTCTTGCTTGCGATCCACTGTAGAGCCCAATCAG 80 Query 133097 CCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | || |||||| || || || | ||||| ||||| || |||| Sbjct 79 CTTTCTTCTTT-ACACAGGGAAGAGTTTCAATGGCATTAAACA 38 >seq255931 Length=537 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 61917 GTCGGCGGTGTAGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGGCC 61976 ||||| |||||| | || | || | ||| ||||| |||||||| ||||||||||| || Sbjct 524 GTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGTCC 465 Query 61977 CAGCTCGGTGGTGGACCACGCGCCCTTAAAGTCGTAGCTCATCaaaaaaaTGCGGTCGAG 62036 || | | | ||||| || ||||| |||||||| ||||| | ||||| |||| | Sbjct 464 GAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCAT 405 Query 62037 CGAGCGGTGCGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGATGGC 62096 | || || | ||||| ||| || ||||||||| ||||||| |||||| Sbjct 404 GTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGC 345 Query 62097 GCTGGTCAGCTCGTACGTCCTGTTGGTCTCGGTCTGCAGCTCGTCGAGCAT 62147 |||||||||||| || || ||||| | | |||||| || | ||| Sbjct 344 AGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACAT 294 >seq601675 Length=487 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||||||| || || || || |||||||| || || ||||| || || || | ||| Sbjct 351 GAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCC 292 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || ||| || |||||||| | || | ||| || | ||||| || || ||||||||| Sbjct 291 TCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTTTCATTTACAATGCCGTCG 232 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 || || || || || || || ||||||||||| || | ||| | || || | | Sbjct 231 GAAGCCGCAAAGAATGCAAGAACATGCTTGATGAAGTGTCTCTCACTATCTTTTAGGGTT 172 Query 133366 TCCCAGTC 133373 |||||||| Sbjct 171 TCCCAGTC 164 >seq10425 Length=666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| |||||||| || ||||||||||| ||||||||| | || |||||| | Sbjct 329 AAGATGCAAATTTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCG 388 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | |||| ||| || | |||||||||||||| || || | Sbjct 389 TCAGATACCATCGAGAATGTGAAAGCAAAGATTCAAGACAAAGAGGGAATCCCTCCCAAT 448 Query 38361 CAACAGCGG 38369 |||||| || Sbjct 449 CAACAGAGG 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495965640257920