Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq113040 251 3e-61 seq237220 136 2e-26 seq608441 134 5e-26 seq163696 132 2e-25 seq26808 131 7e-25 seq671773 123 1e-22 >seq113040 Length=3902 Score = 251 bits (278), Expect = 3e-61 Identities = 461/665 (69%), Gaps = 23/665 (3%) Strand=Plus/Minus Query 450948 GTGTAGGTGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAA 451007 |||| ||||| ||| |||||||| ||||||||| || || |||||||| ||| || | Sbjct 3727 GTGTTGGTGTCTACAAAAATGGACGTGTAGAAATCATTGCCAATGACCAGGGAAACCGTA 3668 Query 451008 CTACTCCTTCATGGGTAAGTTTTACG---GATTCAGAAAGACTTTTAGGGCAAGCTGCTA 451064 ||| ||||||| || || || || ||| | | | || | ||||||| Sbjct 3667 TTACCCCTTCATACGTGGCCTTCACTCAAGACGGTGAACGTTTGATTGGTGATGCTGCTA 3608 Query 451065 A-ATCAATGGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGC 451123 | | | | | | | | | || | |||| || || | |||||| |||||| | ||||| Sbjct 3607 AGAACCA-GCTTACTACCAACCCTGAAAATACTGTCTTTGATGCCAAACGTCTGATTGGT 3549 Query 451124 CGTATGTATGA--TGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAG 451181 || | ||| ||| | ||||||||| | || || ||||| ||| | || Sbjct 3548 CGG--GAATGGAGTGACCAAACTGTACAACATGATGTTAAGTTCTTCCCTTTCAAGGTCA 3491 Query 451182 TAAATCAAAAAGGAAAGCCCTATATTCAAGTAAA---TTATAAAGGTGAAACTAAAACTT 451238 | | | || | || || || |||||||| | || ||||||| | || | Sbjct 3490 TTGAGAAGAACAGCAAACCACATGTTCAAGTAGAAACTTCACAAGGTGACA---AAGTGT 3434 Query 451239 TTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAAT 451298 |||||||||||||||| || |||||||||| ||||||||||| || || || || | Sbjct 3433 TTGCTCCTGAAGAAATCTCTGCTATGGTTCTGACTAAAATGAAGGAGACTGCTGAGGCTT 3374 Query 451299 ATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCAC 451358 | |||| |||||| | || || ||||||| || ||||| ||||||||||| | Sbjct 3373 ACCTTGGCAAAAAGGTTACTCACGCTGTTGTTACTGTGCCAGCTTACTTCAATGATGCTC 3314 Query 451359 AACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 |||| |||||||| |||||||| || ||| ||| ||||| | ||||| | ||||||| Sbjct 3313 AACGTCAAGCAACCAAAGATGCTGGTACA-ATTTCTGGTCTTAATGTAATGAGAATTATC 3255 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 ||||| ||||| ||||||||| |||| ||||| || | || || || || ||| Sbjct 3254 AATGAGCCTACCGCAGCTGCTATAGCCTATGGCCTTGACAA---GAAGGA---AGGAGAG 3201 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || ||| || | || |||||||| ||||| ||||| |||| ||| | || | ||| Sbjct 3200 AAGAATGTTCTGGTCTTTGATTTGGGTGGTGGAACCTTTGATGTATCTCTGCTAACCATT 3141 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||| || |||||||| ||||||||||||||||| || | ||||||||||| Sbjct 3140 GACAATGGTGTGTTTGAAGTTGTCGCAACCAATGGTGATACCCACTTGGGAGGTGAAGAC 3081 Query 451598 ATTGA 451602 |||| Sbjct 3080 TTTGA 3076 >seq237220 Length=3575 Score = 136 bits (150), Expect = 2e-26 Identities = 303/450 (67%), Gaps = 15/450 (3%) Strand=Plus/Plus Query 502388 AGCACTAATGCCAACAGCATCTACATCTCAACTATTAGGCAATTATGAATCATTTGAACC 502447 ||||| |||||| || || || ||| | || | ||||| ||| ||||||| |||||||| Sbjct 2007 AGCACCAATGCCCACTGCCTCAACAGCCCAGATTTTAGGAAATAATGAATCTTTTGAACC 2066 Query 502448 ATTTACTTCTAATATATATACTAGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAA 502507 || ||||||||||| ||| ||| | |||| | || |||||| |||||| ||| | Sbjct 2067 TTTCACTTCTAATATTTATCAAAGACGTGTTTTATCTGGAGAATTTCAAGTTGTAAATCA 2126 Query 502508 ACATTTAATAAATGATTTGAATGAAATCGGTGAATGGACTAATGAAATTAGACAAAAAGT 502567 ||||| | |||| ||| ||| | | |||| | | ||||| | |||| | Sbjct 2127 CCATTTGCTTCGTGATCTGACAGAAGCAGATTTATGGGATGAGGAAATGA---AAAATCT 2183 Query 502568 AATTA---ATGATAATGGTTCTATTCAAAATAT----ATTACTACCTAATATAATTAAAA 502620 |||| | ||||||| ||||| |||||||| | || |||||| ||| | Sbjct 2184 CATTATACACAATAATGGATCTATACAAAATATCGAAAGTA-TACCTACAGAAATACGAG 2242 Query 502621 ACATCTATCAAACTTCATATGAAA--TGAAACAAAAATATATAATAGATGGATGTTCTAT 502678 || | ||| | || | |||| | | ||||| | | | | |||| || || Sbjct 2243 ACTTATATAAGACAGTTTGGGAAATTTCAGTCAAAACAACAATACAAATGGCTG--CTGA 2300 Query 502679 ACGGGGAGCTTATATAGATCAAACCCAATCTATGAATCTTTATTTTGCACAACCAGACTC 502738 || ||||||| ||| ||||||| |||||| | ||| | || |||| | || | | Sbjct 2301 TCGTGGAGCTTTTATTGATCAAAGTCAATCTTTTAATATACATGTTGCTGAGCCGAATTA 2360 Query 502739 TCAAAAATTAACTTCCTCTCAATTTTATGCATGGGAACAAGGATTAAAAACAGGGTTATA 502798 || |||||||| ||| |||||| ||||| || || |||||||||||| | || Sbjct 2361 CGGGAAGTTAACTTCTATTCATTTTTATTCATGGAAAATGGGTTTAAAAACAGGGATGTA 2420 Query 502799 TTATTTACGTAGCAAACCATCAGCAAATGC 502828 |||||| || | |||||| | || ||||| Sbjct 2421 TTATTTGCGAACAAAACCAGCGGCCAATGC 2450 >seq608441 Length=509 Score = 134 bits (148), Expect = 5e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| || ||||||||||| || || | || || ||| | ||| Sbjct 308 ATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCT 367 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| |||||||||||| || || || |||||||| ||||| Sbjct 368 GATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 427 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | |||||| | ||||||||||||||||| ||| | || || | ||||| || Sbjct 428 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACAAC 487 Query 391230 AT 391231 || Sbjct 488 AT 489 >seq163696 Length=3114 Score = 132 bits (146), Expect = 2e-25 Identities = 396/598 (66%), Gaps = 20/598 (3%) Strand=Plus/Plus Query 363743 AGGAATTCCTAAACTAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGG 363802 ||| ||||||||| | || |||||||| | ||||| ||||| |||| ||| ||| Sbjct 1782 AGGTATTCCTAAATTGGAGGATGCTAACGATGCAGGCACAAAGAATGCACATCTCTGTAC 1841 Query 363803 ATTATATTTAGCAGAGGGAGATTCTGCTCTTTCTATGATTCTGTCAGGGTTA--TCAAGT 363860 ||| ||| | |||||||| || ||| || || | | ||||| | | ||| Sbjct 1842 ATTGATTTTGACTGAGGGAGACTCGGCTAAAACTTTGGCTGTATCAGGACTCAGTGTAGT 1901 Query 363861 AAAGATAGAAATTTTTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAGAA 363920 | | ||| || ||| || | ||||| ||||| || ||| |||||||| |||| Sbjct 1902 A--GGCAGAGATCATTACGGAGTGTTTCCATTAAAGGGTAAACCTTTAAATGTGCGAGAT 1959 Query 363921 GCATCAGTTAAACAAATTATGGGAAATGATGAGATATCAAACCTTaaaaaaaTTTTAGGA 363980 || || || ||| || | | ||||| ||| || || | | |||||| | ||| Sbjct 1960 GCGTCCCACAAGCAAGTTCTAGAAAATGTTGAAATCAATAATTTGATTAAAATTCTTGGA 2019 Query 363981 TTAC-GTA-ATGAATTTAAATATGAAATGGATGAAGAATTTAATACTTTAAGATATGGAA 364038 |||| ||| | ||| |||||| | | ||| || || || || ||| | ||||| | Sbjct 2020 TTACAGTACAAGAAA--AAATATAACTCAGTTGATGATTTAAAAACATTACGTTATGGTA 2077 Query 364039 AAGTAATAATTTTATGTGATTCAGATGTAGATGGAAGTCATATTAAGGGACTAATTTTAA 364098 ||||||| || | |||| ||| ||||||| |||||||| || |||||| | | Sbjct 2078 AAGTAATGATAATGGCTGATCAGGATCAAGATGGATCGCATATTAAAGGTCTAATTATCA 2137 Query 364099 ATATGTTTCATAGTATGTGGCCTAATCTTTTAAAAAGAGAAGGTTTTATTACAACTATGA 364158 || | ||||| || |||||| | | ||||| | | ||||| | || | Sbjct 2138 ATTTTATTCATCATAATTGGCCTGAGTTATTAAAGTT-GCCGTTTTTAGAAGAATTCATT 2196 Query 364159 ACACTCCAATTGTTAAAGCAACAAAAGGAAAAGAAATATTAAAAT-TTTATAAT--TTAA 364215 |||| | ||||| ||||| |||||| ||||| | | || || ||| || | ||| Sbjct 2197 ACACCC--ATTGTCAAAGCTACAAAA---AAAGACAAAGAAATATCTTTCTACTCATTAC 2251 Query 364216 CTGATTATGATAATTGGAGAAATGATA-ATAATACAA--AAGGATATTATATTAAATATT 364272 | || | ||| | |||| ||| || | | || || | | ||| |||| ||||| | Sbjct 2252 CAGAGTTTGAAGAATGGAAAAAAGAAACAGAAAACCATCACACATACAATATAAAATACT 2311 Query 364273 ACAAAGGATTAGGAACATCTGATTCTAAAGAAGCTAAAGAATATTTTCAAGATATAGA 364330 ||||||| || || || || || || || |||||||||||||| ||| |||| || Sbjct 2312 ACAAAGGTTTGGGTACCTCCACATCGAAGGAGGCTAAAGAATATTTCCAAAATATGGA 2369 >seq26808 Length=8541 Score = 131 bits (144), Expect = 7e-25 Identities = 175/241 (73%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || || || || || ||||| | || || ||| | || Sbjct 7381 AATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTC 7440 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || ||| | | ||| ||||||||||| |||||||| ||||| || || || Sbjct 7441 CGACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCCAGACCA 7500 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| | || || | || |||||| | |||||||| | ||| | | || ||||| Sbjct 7501 ACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAA 7560 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA--TAA-ATACATTT 391285 ||| | || || | |||||||| ||||| || ||||| |||||| ||| ||| |||| Sbjct 7561 TATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGGTAATATAAATTT 7620 Query 391286 T 391286 | Sbjct 7621 T 7621 >seq671773 Length=2048 Score = 123 bits (136), Expect = 1e-22 Identities = 330/504 (65%), Gaps = 3/504 (1%) Strand=Plus/Plus Query 451103 GATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAA 451162 ||||| |||||| | || ||||||| || || |||| |||||||||| || | || Sbjct 253 GATGCCAAACGTCTTATCGGCCGTAAGTTCGAAGATGCTACTGTACAAGCCGACATGAAG 312 Query 451163 TTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAA 451222 || | | ||| || || | | | ||| || || | || | ||| ||||| Sbjct 313 CACTGGCCATTTGAGGTTGTCAGTGATGGAGGCAAACCTAAGATCAAGGTAGGATATAAG 372 Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 |||||| ||| || ||| || || ||| | || ||||| ||||| |||||||| Sbjct 373 GGTGAAGATAAGACCTTTTTCCCCGAGGAAGTCAGTTCCATGGTGCTTACGAAAATGAAG 432 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 ||||| || ||| ||| | || | || ||||||| || || ||||| || Sbjct 433 GAAACTGCCGAAGCCTATCTCGGCAAAACTGTGCAGAATGCAGTCATCACGGTTCCAGCG 492 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 || |||||||| | ||| | ||||| || ||||||||||| || |||| || || Sbjct 493 TACTTCAATGACTCTCAAAGACAAGCCACAAAAGATGCAGGTACCATCTCTGGCTTGAAC 552 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 ||||| ||||| || |||||||| || || ||||| | || || || || | || | Sbjct 553 GTTCTCCGAATCATCAATGAACCGACTGCTGCTGCGATTGCTTACGGTCTTGACAA---A 609 Query 451463 AAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACT 451522 || | || | |||| |||| | | | ||||| | || || || || || Sbjct 610 AAGGGTACTGGAGAACGAAATGTACTTATCTTTGACCTCGGCGGCGGTACCTTCGACGTG 669 Query 451523 TCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCAT 451582 || | ||| | || || ||||| | || || || || | ||| ||| || || || Sbjct 670 TCCATCCTTACCATCGAGGATGGTATCTTCGAGGTGAAATCCACCGCTGGCGACACCCAC 729 Query 451583 CTAGGAGGTGAAGATATTGATAAT 451606 | |||||||| || |||| ||| Sbjct 730 TTGGGAGGTGAGGACTTTGACAAT 753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1958684352992604