Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq113040 230 2e-54 seq671773 224 7e-53 seq12997 149 5e-30 seq50735 120 2e-21 seq237220 89.7 4e-12 >seq113040 Length=3902 Score = 230 bits (254), Expect = 2e-54 Identities = 821/1254 (65%), Gaps = 46/1254 (4%) Strand=Plus/Plus Query 517445 AATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 |||| |||| ||||| ||| ||||| ||||| | | ||| | |||||||| | Sbjct 2500 AATA-TCTGAGATTTCTTAGTTGGAATGACAGTGTTACGAGGAATGAGTTTGGTCATCAC 2558 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563 ||||| | ||||| | ||| | || || ||| ||||||||| | ||||||| | Sbjct 2559 TCCACCAACAGTTTCAATACCCATAGTCAGCGGATTGACATCAAGCAAGACAATAGCATC 2618 Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 | || ||| || ||| || | | | || || | |||||||||||||||||| Sbjct 2619 A-GT-----ATCTTGTTCACCGCTGAGTACACCAGCCTGCACAGCAGCACCATATGCAAC 2672 Query 517624 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT--TTGAAAGA 517681 ||| |||||||| |||| | | | ||| ||||| ||||| || | |||| Sbjct 2673 AGCCTCATCAGGGTTAATTCCTCGAGATGGTTCCTTACCGTTGAAGAATTCCTTGACC-- 2730 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 |||||| |||||||| ||||| | || ||||| ||||| |||||||||| || | Sbjct 2731 AGTTGTTGAACCTTAGGGATACGGGTAGAACCTCCTACTAAGACAATTTCATCAACATCC 2790 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || | || | | || ||| ||||| | || |||| | | | ||| || Sbjct 2791 TTCTTGTTCATGTCAGCGTCTTCTAATACTTTCTGCACAGGTTTCAAAGTGGATCTGAAG 2850 Query 517802 AAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTC 517859 | ||| || ||| |||||| ||||||||||| || || || || | ||| | Sbjct 2851 AGGTCCATGTTCAA--TTCTTCAAATTTAGCTCTGGTGAGCGTTTCAGAGAAGTCATCAC 2908 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGT-AGTTTGAGTCGAAGAAGATAGTGCACGTTTA 517918 |||| || || || |||| ||||||| | | | | | | || || || || | || Sbjct 2909 CTTCAAAGAATGATTCAATTTCAATCTTGACCTGGTGACTG-GATGACAGGGCTCTCTTT 2967 Query 517919 GCACGTTC-ACATGCTGTCCTTAGTCTTC-GTAAGGCTT--TTG-CTGAT-TGATTCAAA 517972 || ||| || | | | | |||| | | ||| ||| || | |||| | Sbjct 2968 GCCTTTTCTACCTCACGACGCAA--CTTCTGGACGGCGCGGTTGTCTTTTCTGAT----A 3021 Query 517973 TCTGTTTTATATTTTCT-CTTGAA-ATCTTCAACACACCATGTTACAAGACGATTA--TC 518028 || || | | |||| |||| | | ||| | | |||| || ||| | || Sbjct 3022 TCC-TTGCCTTTCTTCTTCTTGTACAGCTTGATGAAG---TGTTCCATGACTCTCTGGTC 3077 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| |||||||||||||| | |||| || || || |||| || | |||| Sbjct 3078 AAAGTCTTCACCTCCCAAGTGGGTATCACCATTGGTTGCGACAACTTCAAACACACCATT 3137 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| | | |||| ||||||| |||||||||||||| |||||| | || ||||| Sbjct 3138 GTCAATGGTTAGCAGAGATACATCAAAGGTTCCACCACCCAAATCAAAGACCAGAACATT 3197 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 | | ||| ||| || || ||||| ||||| || | |||||| || || || ||||| Sbjct 3198 CTTCTCTC---CTTCCTTCTTGTCAAGGCCATAGGCTATAGCAGCTGCGGTAGGCTCATT 3254 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 |||||||||| ||||||||||||| |||| | || |||||||| || ||||| | ||| Sbjct 3255 GATAATTCTCATTACATTAAGACCAGAAATTGTACCAGCATCTTTGGTTGCTTGACGTTG 3314 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 | ||| || || || || || ||||||| ||| || | ||| || | ||| |||| || Sbjct 3315 AGCATCATTGAAGTAAGCTGGCACAGTAACAACAGCGTGAGTAACCTTTTTGCCAAGGTA 3374 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 ||| || || | ||||||||| | | || ||| | || |||| ||| || | | | Sbjct 3375 AGCCTCAGCAGTCTCCTTCATTTTAGTCAGAACCATAGCAGAGATTTCTTCAGGAGCA-A 3433 Query 518389 TTGCTTGGATTCATTTTG-ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 ||| | | || || | | ||||| || || |||||| | | ||| | Sbjct 3434 ACACTTTGTCACCTTGTGAAGTTTCTACTTGAACATGTGGTTTGCTGTTCTTCTCAATGA 3493 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | || || || || | || | ||| ||| ||| |||||||| | | || | ||||| Sbjct 3494 CCTTGAAAGGGAAGAACTTAACATCATGTTGTACAGTTTGGTCACTCCATTCCCGACCAA 3553 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | ||||| |||||||| | |||||| || || | | | || | || || | Sbjct 3554 TCAGACGTTTGGCATCAAAGACAGTATTTTCAGGGTTGGTAGTAAGCTGGTTCTTAGCAG 3613 Query 518568 CATCTCCAATCAGATGTT--CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 |||| ||||||| | ||| | ||| | || || | || ||||| || || | || | Sbjct 3614 CATCACCAATCAAACGTTCACCGTCTTGAGTGAAGGCCACGTATGAAGGGGTAATACGGT 3673 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | || || ||||| ||||| ||||| || ||||||| | ||||| |||| Sbjct 3674 TTCCCTGGTCATTGGCAATGATTTCTACACGTCCATTTTTGTAGACACCAACAC 3727 >seq671773 Length=2048 Score = 224 bits (248), Expect = 7e-53 Identities = 723/1105 (65%), Gaps = 24/1105 (2%) Strand=Plus/Minus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 || ||||| || || || || ||||| || || || || ||| | || ||||| Sbjct 1562 TTGGTAATGGTGATCTTGTTCTCCTTGTTGGTGGACTTCTCGATGGCGGAAACGTTAAGG 1503 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 |||||||||||||| | || || ||||| ||||||||||| || || | | || ||| Sbjct 1502 ATACCATTGGCATCGATGTCGAAGGTGACCTCAATTTGAGGTACACCGCGTGGTGCCGGT 1443 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || || | |||| | || || || |||||||| || | || ||| Sbjct 1442 GGGATACCGGTCAGCTCAAATTTACCGAGCAAGTTGTTATCTTTGGTCATAGCACGCTCA 1383 Query 517394 CCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||||| || | |||||| |||| || | | ||||||||| || || || || ||| ||| Sbjct 1382 CCCTCAAATACTTGGATGAGTA-CTCCGGGTTGATTATCGGAGTAGGTGGTGAATG-TCT 1325 Query 517453 GGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | | | |||| || || || ||||| | | || | ||||||| | ||| || | Sbjct 1324 GAGTCTGTTTAGTTGGGATGGTAGTGTTACGCTTGATGAGTGTGGTCATGACACCTCCAG 1265 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | || || | ||| || || || || || ||||||| | | | || || | | | Sbjct 1264 CAGTCTCAATACCGAGGGATAGGGGTGTTACATCAAGCAACAGCAGATCCTGCACCTCCT 1205 Query 517572 CATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 || | | ||| ||||| |||| || || | ||| |||||||| || || || || Sbjct 1204 CAGACTTGTCACCGTGCAAGA-TAGCAGCCTGGACAGCTGCACCATAAGCTACGGCCTCG 1146 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 517690 ||||| |||| || || || || | || |||||||| |||| | || || | ||| Sbjct 1145 TCAGGGTTAATAGATTTGTTGAGCTCCTTTCCATTGAAGAAATCTTGCAGGAGCT-TCTG 1087 Query 517691 -ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 ||||| || ||||||| || || || || | |||||| || || | || | ||||| Sbjct 1086 CACCTTGGGGATACGAGTGGAGCCACCCACCAGTACAATATCGTGGATTTGAGCCTTATC 1027 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 || || | ||| || || || || || || | | || |||| || | Sbjct 1026 CATCTTAGCATCACGTAGTGACTTCTCCACTGGCTCCATGGTAGACCTGAACAGATCAGC 967 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACA 517868 || || ||||| ||| | ||| | || | || || ||||| || ||||| | Sbjct 966 GTTCAGCTCCTCGAAGCGAGCACGAGTGATAGA-AGTGTAGAAGTCAATACCCTCGAAGA 908 Query 517869 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928 |||||| | ||||| | | ||| || || || || | | | || || | |||| Sbjct 907 GAGAATCTATCTCAATGCTCGCTTGTGTGGACGACGACAAGGTCCTCTTTGCCCTCTCAC 848 Query 517929 ATGCTGTCCTTAGTCTTCGTAAGG---CTTTTGCTGATTGATTCAAATCTGTTTTATATT 517985 |||| || | | | | |||| || ||| || | | | || |||| |||| Sbjct 847 ATGCAGTACGCAAACGCC-TAAGAGCTCTCTTGTTGGTAGCG--AGGTCCTTTTTGTATT 791 Query 517986 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 518045 | |||||||| || | ||| | | || | ||||| ||||| || |||||||||| Sbjct 790 TCCTCTTGAACTCCTGGACAAAGTGATTGACCATGCGATTGTCAAAGTCCTCACCTCCCA 731 Query 518046 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 518105 | | || | || | || | | | || | ||| | ||||| || | | | | | Sbjct 730 AGTGGGTGTCGCCAGCGGTGGATTTCACCTCGAAGATACCATCCTCGATGGTAAGGATGG 671 Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG- 518164 || || ||| || || || | ||||| ||||||||||| || || || | Sbjct 670 ACACGTCGAAGGTACCGCCGCCGAGGTCAAAGATAAGTACATT----TCGTTCTCCAGTA 615 Query 518165 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 ||||| |||||||| || |||| ||||||||||| |||||||| || |||| | | Sbjct 614 CCCTTTTTGTCAAGACCGTAAGCAATCGCAGCAGCAGTCGGTTCATTGATGATTCGGAGA 555 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 || || | |||| || | ||||||||||| |||||||||||||| || || || || Sbjct 554 ACGTTCAAGCCAGAGATGGTACCTGCATCTTTTGTGGCTTGTCTTTGAGAGTCATTGAAG 495 Query 518282 TATGCAGGAACAGTAATAACGGCAT 518306 || || ||||| || || || |||| Sbjct 494 TACGCTGGAACCGTGATGACTGCAT 470 >seq12997 Length=12917 Score = 149 bits (164), Expect = 5e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 870792 AGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATT 870851 ||||| ||||||| || | ||| || |||||||||||||||||||||||| |||| |||| Sbjct 9040 AGAAAGTTATTGTAGACTTTTCATCACCAAATATTGCTAAAGAAATGCATGTTGGCCATT 8981 Query 870852 TAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATG 870911 |||||||||| || |||||||| ||||||||| || |||||| | | | |||| Sbjct 8980 TAAGATCAACCATCATTGGTGACAGTATTTGTAGAGTGTTAGAATTTTTAAATAATGATG 8921 Query 870912 TTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATA 870971 || | | | || ||| ||||||| ||||| ||||| || || ||||| |||||| || Sbjct 8920 TTGTTAGATTGAACCATTTGGGTGACTGGGGTACTCAGTTTGGAATGTTGATTGCTCATT 8861 Query 870972 TTAAAAATAA 870981 | || |||| Sbjct 8860 TGCAAGATAA 8851 >seq50735 Length=811 Score = 120 bits (132), Expect = 2e-21 Identities = 400/613 (65%), Gaps = 16/613 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG--GT 518165 ||||| |||||| || |||| ||| || ||||| ||||| | ||| |||| || Sbjct 643 ACATCGAAGGTTCCTCCTCCCAGATCGAAGATAAGAACATT--TCTCTCGCCCTTGAGGT 586 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 | ||||| ||||| ||||| | ||| ||||| || || || || || || | | || | Sbjct 585 TCTTATCGAGACCGTACGCGAGAGCGGCAGCTGTAGGCTCGTTGATGATGCGGAGCACGT 526 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | ||||| || || || || || || ||||| || | || || ||||| || |||| Sbjct 525 TCAGACCGGCGATAGCCCCCGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTATG 466 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTTG 518343 | ||||| || | || || || ||| | || | ||| ||||| || | | Sbjct 465 CCGGAACTGTGACTACCGCGTCCCCCACTGTACTTCCTAGATA--CGCTTCCGCAATCTC 408 Query 518344 TTTCATTTTACTTAAAATCAT--TGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA 518401 |||||||| | | | ||| || ||| ||| |||||| | || |||| | || Sbjct 407 CTTCATTTTGGTCAGCACCATGCTGCTGA--TTTCTTCTGGCGCGAATCGCTTCGTCTCG 350 Query 518402 T-TTTGATAT-GATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 ||||| | ||| | | | ||||| | | | || ||||| || |||| Sbjct 349 CCTTTGAACTCGATCTGT--ATTTTCGGTTTGCCGCAGTCGCTGATCACTTTGAAGGGCC 292 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | | | |||||| |||| | |||||| ||| | || || || | | ||| | Sbjct 291 AATGCTCCATATCCTGCTGAATCTTGGGGTCATCAAATTTCCTCCCGATCAGCCTTTTCG 232 Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 | ||||| | || ||| | || || | || | || | |||||||| || || || | Sbjct 231 CGTCAAACACGGTGTTGTTAGGGTTCAAGGCGACCTGGTTCTTGGCTGCGTCGCCGATGA 172 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 || | || || || || || | || || ||||| || || || || || || || |||| Sbjct 171 GACGCTCCGTGTCCGTGAACGCCACGTACGATGGTGTGGTACGGTTGCCCTGGTCGTTCG 112 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 | || || || || || |||| |||||||| || ||||| | || |||||||||| Sbjct 111 CGATGATGTCCACGTTTCCATGCTGCCATACTCCAACACACGAGTATGTGGTTCCTAAAT 52 Query 518700 CAATACCAATAGC 518712 |||| || ||||| Sbjct 51 CAATTCCGATAGC 39 >seq237220 Length=3575 Score = 89.7 bits (98), Expect = 4e-12 Identities = 285/435 (66%), Gaps = 14/435 (3%) Strand=Plus/Plus Query 400263 ATGCCAACTGCAAGTACTTCTCAAATTATGGGATGGAATGAATGTATTGAACCTTATACA 400322 ||||| ||||| || | || ||| | ||| ||||||| | ||||||||| || Sbjct 2014 ATGCCCACTGCCTCAACAGCCCAGATTTTAGGAAATAATGAATCTTTTGAACCTTTCACT 2073 Query 400323 GAAAATATTTATTCAAGAAGTACTATGGCTGGAGAATATTTTGTGATTAATAAACATCTC 400382 ||||||||| |||| || | | ||||||||| | || | ||| | ||| | Sbjct 2074 TCTAATATTTATCAAAGACGTGTTTTATCTGGAGAATTTCAAGTTGTAAATCACCATTTG 2133 Query 400383 ATAAAAGATCTTATTGAGTTGGGTGTATGGAATTCAGAAATGGTTGATCTTATTAAATAT 400442 | ||||| | || | | ||||| || |||||| |||| |||| | | Sbjct 2134 CTTCGTGATCTGACAGAAGCAGATTTATGGGATGAGGAAATGAAAAATCTCATTATACAC 2193 Query 400443 TACAAAGGATCTGTTGCTAATATTCCGAA--TATTCC---AGACAACATTAAAGCTATTT 400497 | || |||||| | ||||| |||| ||| || ||| || | | | ||| | Sbjct 2194 AATAATGGATCTATACAAAATAT--CGAAAGTATACCTACAGA-AATACGAGACTTATAT 2250 Query 400498 ACCGGACTGTTTGGGAAATTCC--TCAAAAATCCATCATTGAAATGGCAGCTGATAGAGC 400555 | ||| |||||||||||| | |||||| || || ||||||| |||||| | | Sbjct 2251 AA--GACAGTTTGGGAAATTTCAGTCAAAACAACA--ATACAAATGGCTGCTGATCGTGG 2306 Query 400556 ACCTTTTGTTGATCAAACTCAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAG 400615 | ||||| ||||||||| ||| | | ||| | | ||| | | || | || | | Sbjct 2307 AGCTTTTATTGATCAAAGTCAATCTTTTAATATACATGTTGCTGAGCCGAATTACGGGAA 2366 Query 400616 ATTAAATTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTT 400675 |||| |||| || |||||| |||||| | ||| | ||||| || ||||||||||| Sbjct 2367 GTTAACTTCTATTCATTTTTATTCATGGAAAATGGGTTTAAAAACAGGGATGTATTATTT 2426 Query 400676 GAGATCTAAACCAGC 400690 | || | |||||||| Sbjct 2427 GCGAACAAAACCAGC 2441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3747430240364578