Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq237220 116 4e-21 >seq237220 Length=3575 Score = 116 bits (128), Expect = 4e-21 Identities = 236/350 (67%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 |||||||| |||| || |||||||||||||| | |||||||||| || | | ||| Sbjct 1751 AAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAAAATTG 1692 Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 || ||| || | ||| |||||| ||||| |||||||| | || | ||||| Sbjct 1691 GATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAATTTTCT 1632 Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG 106447 || ||| | || || | ||| | | ||| || ||| | | || | | ||||| Sbjct 1631 GTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGT---TTTGTTATCATTA 1575 Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| || | ||||| || || || || ||||| || ||| ||||| | | ||| Sbjct 1574 ACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAGATGTA 1515 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 | |||| ||||| || |||| ||| || ||||| || || ||||| || || ||| Sbjct 1514 AATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTGATTA 1455 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 || ||| | || || | ||| || | | |||||| || || || ||||| Sbjct 1454 CTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTC 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585018228124120