Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq51755 185 6e-42 seq255931 116 2e-21 seq608441 98.7 6e-16 >seq51755 Length=2487 Score = 185 bits (204), Expect = 6e-42 Identities = 592/903 (66%), Gaps = 33/903 (4%) Strand=Plus/Minus Query 5653 GTCGTGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCGA 5712 ||| || ||||| | ||| ||||| |||||||| || ||||| |||| ||||| || | Sbjct 1869 GTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGG 1810 Query 5713 TTCGACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGG 5772 || | || | | |||| | |||| || || || ||||| || || ||| Sbjct 1809 CGGAACACCTTGGGTCAGCAGATACCTGATACCGAAGTCGGTGGTGTAAGTTTCCTTTGG 1750 Query 5773 GTTCCACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGATC--CGTTAACGACCAGGCA 5830 |||| || |||||||| |||| ||||| ||||| ||| ||||| ||||||||| Sbjct 1749 ACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAGTGTCGTTA--GACCAGGCA 1692 Query 5831 CCCTTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCGCTGGC--GT 5888 |||||| ||||||| |||| || || || ||||| | ||| || || ||| | || Sbjct 1691 CCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTAC--TTCTGGGCTTCCTTGT 1634 Query 5889 AGTCGACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCA-ATTGTAACCGT 5947 ||| ||||| | ||||||||| || || | ||| ||| |||| | |||| || Sbjct 1633 AGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGGTCAGCTCGTAA--GT 1576 Query 5948 T-TACCCCGCTTCTCGCCCAACTCGTCAAGCATCACGCGAAGTTCCCGCAACAAAAGAG- 6005 | |||| || | ||| ||| || | ||| || | ||| | | ||| Sbjct 1575 TCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTCTTTC-----ATGAGC 1521 Query 6006 TGTACGTATTGCGGTCC-ACCTCGGCATTACCCAACACAGGATTAGCACCCTTTCCACCC 6064 || |||||| ||| | | | | ||| | |||| ||||| || || || || Sbjct 1520 TGAACGTATACATCTCCGTCTTTAGGACCACCGAGGTCAGGGTTAGCGCCTTTGCCGCCA 1461 Query 6065 GGAAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAA----CTC 6120 || |||||||| ||||| || || || || ||||||||||| || | || || || Sbjct 1460 GGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGAAGTCTTTC 1401 Query 6121 GCGGACACTTGTGACGAACACCTTACGTTTGGAGTCATCGTTCATAAAATAAAACGGATC 6180 |||| | ||||| | ||| |||| | |||| | | || | || ||||| Sbjct 1400 ACGGAGCC----AACGAAACGGTCACGCTTGGTTTTATCGGTGAAGAAGAAGAAGGGATC 1345 Query 6181 GCTCAACGTCCACCCCCCTATGGATGGTAGGA-CTGTCAACGAAGGGTTGTGACGTTTGA 6239 | ||| ||||| || || || || |||| || || | ||| || || |||| | Sbjct 1344 GGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAAC-CAGTATTCGCTTGTTTCA 1286 Query 6240 TGGCCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTCT 6299 ||||||||| || |||||||| ||||| | ||||| | | | | || || | Sbjct 1285 ACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTT 1226 Query 6300 GTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCAG 6359 | || || |||| || |||||| ||||| ||| ||||||||||| || || || Sbjct 1225 GAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGC 1166 Query 6360 CGCAGGATTTCTGTAGCGCCTCAAA--GGAATTGGGAATCTGCTTGAGGGCGTCGTTTAT 6417 ||| || ||| | || | ||| | || ||| | || | ||| || || Sbjct 1165 TGCATGAACGCTGCAATGCTTGAAAACTGCCTT--CAATTTCTTTCAAACTGTCATTGAT 1108 Query 6418 GCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGG 6477 ||| | |||||||||||| || ||||| ||||| |||| || ||||| || || | || Sbjct 1107 GCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCGGAACCGG 1048 Query 6478 TACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGAC 6537 | ||| | ||| |||| ||| |||||| ||||| || ||||| || || || || Sbjct 1047 GATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGTAGGCGCCCAC 988 Query 6538 GAC 6540 || Sbjct 987 AAC 985 >seq255931 Length=537 Score = 116 bits (128), Expect = 2e-21 Identities = 351/532 (66%), Gaps = 19/532 (4%) Strand=Plus/Minus Query 5747 AAATCTGTCGTGTATGTCTCGCCTGGGTTCCACGATGGAGCGTACAGAGGTGTCTGGTGT 5806 || || || ||||| || || ||| |||| || ||||||||||||| ||||||||| Sbjct 526 AAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGT 467 Query 5807 CCCAGATC--CGTTAACGACCAGGCACCCTTGTAGTCGTACGTCATAACAAAGATGTGAT 5864 || ||| ||||| ||||||||||||||| ||||||| |||| || || || || | Sbjct 466 CCGAGAGTGTCGTTA--GACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGT 409 Query 5865 CAAGATACCTTTGTGCGCTGGC--GTAGTCGACAACGTCGATCTTGTCATGTCCCGCGCC 5922 | | ||| || || ||| | ||||| ||||| | ||||||||| || |||| Sbjct 408 CCATGTAC--TTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCT 351 Query 5923 GATAGCACTTGTCA-ATTGTAACCGTT-TACCCCGCTTCTCGCCCAACTCGTCAAGCATC 5980 ||| ||| |||| | |||| ||| |||| || | ||| ||| || | ||| Sbjct 350 GATGGCAGAGGTCAGCTCGTAA--GTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATT 293 Query 5981 ACGCGAAGTTCCCGCAACAAAAGAG-TGTACGTATTGCGGTCC-ACCTCGGCATTACCCA 6038 || | |||| | | ||| || |||||| ||| | | | | ||| | Sbjct 292 TGACGTAATTCCTTC-----ATGAGCTGAACGTATACATCTCCGTCTTTAGGACCACCGA 238 Query 6039 ACACAGGATTAGCACCCTTTCCACCCGGAAACTCCCAGTCAATGTCCACTCCGTCAAAGA 6098 |||| ||||| || || || || || |||||||||||||| || || || || |||| Sbjct 237 GGTCAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGA 178 Query 6099 ACTTCCATGTCTCCAGAAACTCGCGGACACTTGTGACGAACACCTTACGTTTGGAGTCAT 6158 ||||||| || | || || || || | ||||| | ||| |||| | || Sbjct 177 ACTTCCAGGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTAT 118 Query 6159 CGTTCATAAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACTGTCA 6218 || | | || | || |||||| ||| ||||| || || || || |||| || | | Sbjct 117 CGGTGAAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTA 58 Query 6219 ACGAAGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTA 6270 | || || |||| | ||||||||| || |||||||| ||||| Sbjct 57 AGCCAGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTA 6 >seq608441 Length=509 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| || || || | | ||| | || || || ||||| || || || Sbjct 499 TTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCGAA 440 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| ||||| ||| | || | ||||| ||||| ||| || ||| || Sbjct 439 AATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATT 380 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| | ||| ||| || || || | ||||||||||| || |||||||| || || Sbjct 379 TTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTAAC 320 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 319 AAAAATCTGCAT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321971238557064