Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq237220 563 1e-155 seq562919 118 1e-21 seq601675 104 3e-17 >seq237220 Length=3575 Score = 563 bits (624), Expect = 1e-155 Identities = 1205/1794 (67%), Gaps = 44/1794 (2%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||||| |||| ||| ||||| ||||||||| ||||||||||| || Sbjct 2472 TTTATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCC 2413 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || |||||||| | ||||| ||| ||||| ||| |||||| || ||| | || Sbjct 2412 TGTTTTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGG 2353 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | || ||| ||||||| ||||||||| ||||||||||| || || | |||||| || Sbjct 2352 CTCAGCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGC 2293 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | || | |||| || || ||||| ||||| ||||| | | | || Sbjct 2292 CATTTGTATTGTTGT--TTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATT 2235 Query 47211 TCTTCTGGGAGA--TTAG-TATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 ||| || | | || | ||||||| |||||||| || | |||||| ||||| Sbjct 2234 TCTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTC 2175 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaA--AGATGAGGATTAACAA 47325 | ||| | ||| | | | ||| || | | | || | ||| |||| |||| Sbjct 2174 ATTTCCTCATCCCATAAATCTGCTTCTGTCA--GATCACGAAGCAAATGGTGATTTACAA 2117 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACTTGTATATGGTTCTA 47382 ||||||||||||||||| || ||| || ||| |||||| || | ||||| | Sbjct 2116 CTTGAAATTCTCCAGATAAAAC---ACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAA 2060 Query 47383 TAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA 47442 ||||||||||||||| ||||| || || ||||| || || ||||| | ||| | || | Sbjct 2059 AAGATTCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAA 2000 Query 47443 AGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGAT 47502 ||| | | |||| || || | |||| ||||| | || Sbjct 1999 GAGAATTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAAT 1940 Query 47503 CTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCAT 47562 ||| |||| |||||| | || || || | || ||| |||| || || | Sbjct 1939 CTGTTGGATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTT 1880 Query 47563 TATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 ||||||| || || || || || | ||||||||||||||| ||||| | || Sbjct 1879 CGTATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCAT 1820 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGAT 47682 | || || ||||||||||||| | ||||| || | ||||||| ||| |||| Sbjct 1819 AGTAAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTA 1760 Query 47683 ANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAG 47742 | || | ||| || | ||||||||||| || ||||| |||| ||| Sbjct 1759 AACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCC 1700 Query 47743 TTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTA 47802 | ||| || | ||||| || | ||||| | |||| || || |||||||| | Sbjct 1699 TAAAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCA 1640 Query 47803 GANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTAT 47859 | || |||| ||||||| ||||| | | ||||||| Sbjct 1639 AATTTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTTAT 1580 Query 47860 TTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGG 47917 |||||||| |||| || || ||||| |||| || ||||| || || |||| | | Sbjct 1579 CATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAG 1520 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 || ||| ||| || |||||||| || || |||| |||||| || ||||| ||||||| Sbjct 1519 AT--GTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTT 1462 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 |||||| | | ||||||| || || | | ||| | || || ||||| |||| Sbjct 1461 CTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTAC 1402 Query 48038 CTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC--TAGCTTTA 48095 |||| ||| || || | |||||||| || || | | || | | || | || Sbjct 1401 TTGAGCTTCTATTATTGCTTTCCAAA--GTACTTGTGCTCTTACTTGTTTAATAAATCTA 1344 Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCAT--CCCCATACACATTATCTA 48153 || || | ||| || | |||||| |||||||| | ||||| ||| | | ||| Sbjct 1343 TTTTCTTTTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCCCA-ACAG-TCAGCTA 1286 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 ||||||| || || | ||||||||| | | ||| | ||||||||| ||||| ||| Sbjct 1285 ACCCAGGGCAATCGTGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCA 1226 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATAAATAAAT-CCCTAGTTCTTAGTTCTTCATTG 48272 | || | ||| |||||||| | || ||||| || | |||| | | || |||||| || Sbjct 1225 TGAAAAGATCAGGTATCCACAATGC-ATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTT 1167 Query 48273 CCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 ||| | || | ||||| | ||||| || | |||||| |||||||||||||||||||| Sbjct 1166 CCAGTGTTTTTCTTTAAATCTAAGAAT-TCAAATATATCGGCATGCCATGGTTCTAAATA 1108 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 | ||| | |||| || || ||||||||||||||||| | |||||| || ||||| || Sbjct 1107 GACTGCAAAAGCACCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATT 1048 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||||||| ||||||||| |||| ||||||||| | |||||| ||||| | |||||| | Sbjct 1047 GTAAACTCGTAACATTGGTACAAGACCATTTGACACACCATTTGTTCCTGCTATATAAGT 988 Query 48452 TCCACTAGCTCTTATATTACTAATTGAAAT----ACCTATACCACCTGCCATTTTAGATA 48507 || |||| |||||| | | || || ||| || |||||||| |||||||| Sbjct 987 ACCTTTAGCCCTTATA----CAGTGGACATGGACACCAATTCCACCTGCAGATTTAGATA 932 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 | | ||||||| | || | |||||| ||||| |||||||| ||||||||| ||||| || Sbjct 931 TCAAAGCACACTGCTTTAAGGTATCGTAAATCCCTTCTATGCTATCATCTTTCATAGCTA 872 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 ||||||||| || | || || | |||| | | ||||| || || | Sbjct 871 TTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGG 812 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 ||||| | || ||||||| || | || |||||||| | || | | ||| ||||| Sbjct 811 CATGAGTGAAATATTTCTCAGAAAGTAAATTATATGTATTTATGGCTGCATCAATATCTT 752 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 ||| || || || || || | ||| ||||||| |||||||| |||| ||| Sbjct 751 CACCATGAATTCCAATGGACACTCTCATCAACATATGTTGAGGTCGTTCAGCAA 698 >seq562919 Length=404 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 |||||| ||||| | || ||||| || || || ||||| | |||||| || |||||| Sbjct 239 TCATTACTGAATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCA 180 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || || || ||||| |||||||| |||||||| ||||| | |||||| ||| | Sbjct 179 AAACTGCCCGAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACCAAAT 120 Query 19123 CTAGCA-TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | ||| || | || || |||| | || ||||||||||| ||||| |||||||| || Sbjct 119 GTTGCAGTCTTGCTTGCGA-TCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGG 61 Query 19182 CATTGTCTCTATAGAATTAAATAG 19205 | || || || | |||||| || Sbjct 60 AAGAGTTTCAATGGCATTAAACAG 37 >seq601675 Length=487 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| ||||||| |||||| || || ||||| || || || ||||||||||| || Sbjct 348 TACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTCA 289 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 || | || ||||| ||||||| || || || |||||||| || || || || | Sbjct 288 GTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTTTCATTTACAATGCCGTCGGAA 229 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || ||||| ||||| | ||||| || || || ||| | ||| Sbjct 228 GCCGCAAAGAATGCAAGAACATGCTTGATGAAGTGTCTCTCA 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557380671013320