Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq51755 232 5e-56 seq26808 161 8e-35 seq608441 141 7e-29 seq255931 102 6e-17 >seq51755 Length=2487 Score = 232 bits (256), Expect = 5e-56 Identities = 657/988 (66%), Gaps = 25/988 (3%) Strand=Plus/Minus Query 42465 ATCTGTCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAATA 42524 |||| ||||| || || ||||| || | |||||| ||| |||||| || | || | Sbjct 1955 ATCTCCCTATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACT 1896 Query 42525 CCCGTGAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACATG 42584 || ||||| || | | || | ||| | ||||| ||||| || ||||||||||| Sbjct 1895 CCGGTGAACGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATA 1836 Query 42585 GCCACGCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAAAAGCGTT-TGA-ACGG 42642 || || || | || | |||| || || ||| ||| || ||| || | Sbjct 1835 GCAACACCGACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCG 1776 Query 42643 CATAATCTGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGAT 42702 | || | |||||| ||| ||| |||| ||||| || ||| || |||| Sbjct 1775 AAG--TCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGAT 1718 Query 42703 GGCCCAAATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTAT 42762 | || | | || ||||| ||||| || ||||| || ||||| | || || | || Sbjct 1717 GTCCGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGAT 1658 Query 42763 CCAAATAGTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAA 42822 ||| || || || || || ||||| | |||| ||| ||||| || ||||| | Sbjct 1657 CCATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGA 1598 Query 42823 TTGCGCTAGTCAATTCGTATTTGCGATTAGTTTCGTTTTCTAGTTCGTCCAGCATGTCGC 42882 | || |||| ||||| | | | ||| || | || || |||| ||| | | Sbjct 1597 TGGCAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGAC 1538 Query 42883 GCAATTCT--CGTAA-CAAAACTACATACGTAAGACCGTCATTTTGAGGATCTCCAATTG 42939 | |||||| | | | | ||| |||| | ||||| || |||| | || | | Sbjct 1537 GTAATTCTTTCATGAGCTGAACGT-ATACATCT--CCGTCTTT---AGGACCACCGAG-G 1485 Query 42940 TC-GGATTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAAT 42998 || || ||||| ||||| || || || || ||||||||||||||||| || || || || Sbjct 1484 TCAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAAC 1425 Query 42999 TTCCAAGTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTGTTTGCATCG 43058 ||||| || | | || || || || | || || | ||||||| || |||| Sbjct 1424 TTCCAGGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCG 1365 Query 43059 CTGAAAAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACA-CTTTAAG 43117 |||| || | || || |||| ||||||||| ||||| ||||||||||| | |||||| Sbjct 1364 GTGAAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAA- 1306 Query 43118 ATGAGGGTTAGCTT-TTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCAT 43176 | || || |||| ||| ||| ||| | || || ||||| |||||||| || || | Sbjct 1305 ACCAGTATTCGCTTGTTTCAACTG-CATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGT 1247 Query 43177 TCCACGAGGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAA 43236 |||| || || | || ||||| || ||||| | |||||||| |||||||| || |||| Sbjct 1246 TCCAGGACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAA 1187 Query 43237 CTTTGAAGTCGCTTCGAC--CCGC-ACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAA 43293 | ||||||| |||| || |||| || || || | |||| ||||||||| || Sbjct 1186 CCTTGAAGT--CTTC-ACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAA 1130 Query 43294 TAGATTTTAAACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACA 43353 | ||| ||||||||||| ||||| ||||| || || ||||| || || ||||| | || Sbjct 1129 TTTCTTTCAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCA 1070 Query 43354 AATGAGACAAATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCC 43413 |||||| || || || | || | || || || || | | || ||||||| Sbjct 1069 AATGAGTCAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCC 1010 Query 43414 ATTCTACAAAATAAGCGGCCACGGCTTT 43441 |||| || || || ||| |||| |||| Sbjct 1009 ATTCGACGAAGTAGGCGCCCACAACTTT 982 >seq26808 Length=8541 Score = 161 bits (178), Expect = 8e-35 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||| |||||||| | | |||||||||||||| || |||||||| || ||||| || || Sbjct 7612 ATTACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTC 7553 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||| | | |||| || ||||| ||||| ||||| || | ||| ||||| || || Sbjct 7552 TGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGG 7493 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||| ||||| || ||||||||||| ||| ||| |||| | |||||| || | ||| Sbjct 7492 CGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTC 7433 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||| || | || | || || || || | ||||| || ||||||||||| || Sbjct 7432 CACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGT 7379 >seq608441 Length=509 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329 || || |||||||| || || |||||||||| | || | | || || | ||| || Sbjct 507 AGAGTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTC 448 Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 101389 || || || |||| ||||| ||||| || |||||||| ||||| |||||||||||| | Sbjct 447 CCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCT 388 Query 101390 TTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAA 101449 |||||| |||||| || ||||| | ||| ||||| | || | ||||| || || | | Sbjct 387 TTTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGA 328 Query 101450 GTTTTTACAAATATCTGCATGGT 101472 ||||| ||||| ||||||||||| Sbjct 327 GTTTTAACAAAAATCTGCATGGT 305 >seq255931 Length=537 Score = 102 bits (112), Expect = 6e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 42942 GGATTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTC 43001 || ||||| ||||| || || || || ||||| ||||||||||| || || || || ||| Sbjct 232 GGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTC 173 Query 43002 CAAGTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTGTTTGCATCGCTG 43061 || || | | || || || || | || || | ||||||| || |||| || Sbjct 172 CAGGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCGGTG 113 Query 43062 AAAAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACA-CTTTAAGATG 43120 || || | || || |||| ||||||||| ||||| ||||||||||| | ||||||| Sbjct 112 AAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAG-CC 54 Query 43121 AGGGTTAGCTT-TTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGG 43171 || || |||| ||| ||| ||| | || || ||||| |||||||| || Sbjct 53 AGTATTCGCTTGTTTCAACTG-CATCAGCTGCCCGAAGTTACCTTTGTAGGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393028470439941