Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq51755 174 1e-38 seq255931 122 7e-23 seq617918 114 1e-20 seq462883 107 1e-18 seq26808 107 1e-18 seq608441 100 2e-16 seq191525 91.5 1e-13 >seq51755 Length=2487 Score = 174 bits (192), Expect = 1e-38 Identities = 502/766 (66%), Gaps = 15/766 (2%) Strand=Plus/Plus Query 27695 GGAACCGTGGTGGCCGCTTACTTTGTCGAGTGGGGTGTGTATGGTAGACAGTATCCGGCC 27754 |||| || |||| ||| ||||| ||||| ||||| |||||| |||| ||| || | Sbjct 979 GGAAAAGTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTG 1038 Query 27755 AACAAACTACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGC 27814 || | || | || || ||||| |||||||| |||||||| | || ||||| || Sbjct 1039 GACCGCATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGT 1098 Query 27815 GGAGACGGTATCAACGATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAAA 27872 || || || ||||| || || | ||| | || || | |||| | | | || Sbjct 1099 GGTGATGGCATCAATGACAGTTTGAAAGAAATTG--AAGGCAGTTTTCAAGCATTGCAGC 1156 Query 27873 AGTCATGCTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGC 27932 |||||| ||| | ||||| | || || |||||| |||| || |||| Sbjct 1157 GTTCATGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGC 1216 Query 27933 AAAAACCGCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGT 27992 | || || |||||||| || | | ||||||||||| ||||| |||||||| || ||| Sbjct 1217 AGAAGCCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGC 1276 Query 27993 TGATGGCCATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGA 28052 ||||| | |||| | || | || || | || ||||||||||| |||| Sbjct 1277 TGATGCAGTTGAAACAAGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGA 1336 Query 28053 CTCTGAGCGATCCATTCTTTTTTATGCACGACCCGGCCAAGCGTG-CCGTGTTTGTAGAG 28111 | || |||||| ||||| || | ||| ||||||||| |||| || || | Sbjct 1337 CATTGGCCGATCCCTTCTTCTTCTTCACCGATAAAACCAAGCGTGACCGT-TTCGTTGGC 1395 Query 28112 TCTGTGCGCGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAG 28171 || ||| || || || ||||| ||||||||||| || || |||||| | || |||||| Sbjct 1396 TCCGTGAAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAG 1455 Query 28172 TTTCCGGGTGGAAAGGGAGCCAACCCCGCGATCGGTAACCC---CGACATTGACGCAAAA 28228 || || || || || || || ||||| | ||||| || ||| || | | Sbjct 1456 TTCCCTGGCGGCAAAGGCGCTAACCCTGACCTCGGTGGTCCTAAAGACGGAGATG--TAT 1513 Query 28229 ACGTACACCGCGCTGTTGCGCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaC 28288 |||| || ||| || ||| || | ||| |||| ||| |||||| | | Sbjct 1514 ACGTTCA----GCTCATGAAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACT 1569 Query 28289 GATCGCGTCTACCAACTAACCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTC 28348 | | | ||| | || ||| | || || || ||||| || || || ||||| || Sbjct 1570 GGTAGAACTTACGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTG 1629 Query 28349 AACTACGCTTCGGCCCAAAAACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGG 28408 |||||| ||||| || | |||| || |||||||| ||||||||||| || | | Sbjct 1630 AACTACAAGGAAGCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAG 1689 Query 28409 GGCGCCTGGTCCAACACCGACGTGGGCCATCAGACACCGCTTTACG 28454 || |||||||| ||| | | || |||||||| | || |||| Sbjct 1690 GGTGCCTGGTCTAACGACACTCTCGGACATCAGACCGCTCTATACG 1735 >seq255931 Length=537 Score = 122 bits (134), Expect = 7e-23 Identities = 307/462 (66%), Gaps = 11/462 (2%) Strand=Plus/Plus Query 27966 AGCCGTACAAGGGTAACTTTGGCCAGTTGATGGCCATCAAACGACACCATCCCCACCTAT 28025 |||| ||||| |||||||| || ||| ||||| | |||| | || | | || Sbjct 1 AGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAAGCGAATACTGGCTTAA 60 Query 28026 CCATACTGCCCTCGATTGGTGGGTGGACTCTGAGCGATCCATTCTTTTTTATGCACGACC 28085 || | || ||||||||||| ||||| || |||||| ||||| || | ||| Sbjct 61 AGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCTTCTTCTTCACCGATA 120 Query 28086 CGGCCAAGCGTGC-CGTGTTTGTAGAGTCTGTGCGCGAATTTCTGCAAACGTGGAAGTTC 28144 ||||||||| ||| || || | || ||| || || || ||||| ||||||||| Sbjct 121 AAACCAAGCGTGATCGT-TTCGTTGCCTCCGTGAAAGACTTCCTCCAAACCTGGAAGTTC 179 Query 28145 TTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGGTGGAAAGGGAGCCAACCCCGCGATC 28204 || || || |||||| | ||||||||||| || || || || || || ||||| | || Sbjct 180 TTCGATGGTGTCGATATTGACTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCCTGACCTC 239 Query 28205 GGTAACCC---CGACATTGACGCAAAAACGTACACCGCGCTGTTGCGCGAACTAAGATTT 28261 ||| || ||| || | | |||| || ||| || ||| || | Sbjct 240 GGTGGTCCTAAAGACGGAGATG--TATACGTTCA----GCTCATGAAGGAATTACGTCAA 293 Query 28262 ATGCTGGACGAGTTGGCGGaaaaaaaCGATCGCGTCTACCAACTAACCACCGCTATTAGC 28321 ||| |||| ||| |||||| | | | | | ||| | || ||| | || || ||| Sbjct 294 ATGTTGGATGAGCTGGCGGCTGAGACTGGTAGAACTTACGAGCTGACCTCTGCCATCAGC 353 Query 28322 GCCGGGCATGATAAAATACAAGTGGTCAACTACGCTTCGGCCCAAAAACATCTGGACCAC 28381 ||||| || || || ||||| || |||||| ||||| || | ||||||| Sbjct 354 GCCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGAAGCCCAGAAGTACATGGACCAT 413 Query 28382 ATTTTCGTTATGAGTTACGATTTTAGGGGCGCCTGGTCCAAC 28423 |||||||| ||||||||||| || | ||| |||||||| ||| Sbjct 414 ATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTCTAAC 455 >seq617918 Length=543 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 7531 CGTGAAGAGGCTCGGTTAAGCACTTTCAAGAATTGGCCCGTGCCGTTTCTTGATCCCCAA 7590 || ||||||| || | | ||||| | | |||||||| ||||| |||| || | Sbjct 273 CGAGAAGAGGAACGTCTGAAGACTTTTGATCAGTGGCCCGTTACGTTT-TTGACACCGGA 331 Query 7591 ACTAT-GGCCCGCAACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGTT 7649 | || |||||||||||| || || || | ||||| | |||||||| | || || || Sbjct 332 GCAATTGGCCCGCAACGGATTCTACTACCTCGGTCGCGGCGACGAGGTTTGCTGTGCTTT 391 Query 7650 TTGTAAAGTGGAAATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGAA 7709 ||||| || ||||||||| |||||||||| || ||||| || | |||||||||| Sbjct 392 CTGTAAGGTAGAAATCATGAGGTGGGTCGAGGGCGACGACCCTGCTGCCGACCATCGGAG 451 Query 7710 GTGGGCACCGCAGTGTCCGTTT 7731 |||||| || |||||||| ||| Sbjct 452 GTGGGCCCCCCAGTGTCCCTTT 473 >seq462883 Length=292 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 7836 CACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGG 7895 ||| |||||||||||||||| |||| |||||||| || | | || || || || Sbjct 76 CACCTTCAAGGACTGGCCGAGATGTATGCGCCAGAAACCCGAGGAATTGGCGGAGGCCGG 135 Query 7896 ATTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAA 7955 ||| | ||| || |||| ||||| | || || || ||||| |||||||| || || || Sbjct 136 ATTTTTCTATACAGGCCAAGGTGACAAAACTAAATGCTTCTATTGTGACGGAGGGCTAAA 195 Query 7956 AGATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGC 8015 ||||||||| | || | |||||||| || ||||| | ||||| || ||||| Sbjct 196 AGATTGGGAAAGTGATGACGTTCCGTGGGAACAGCACGCTAGATGGTTCGACCGTTGCGC 255 Query 8016 ATATGTCAAACTAGTCAAAGGGGAGGAATATGTTCAG 8052 ||| || |||| || ||||| || ||| ||||| Sbjct 256 ATACGTGCAACTGGTGAAAGGACGTGACTATATTCAG 292 >seq26808 Length=8541 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| || ||||| || ||| ||||| || ||||| || || || Sbjct 7608 CCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAA 7549 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || || || ||||||||||| || || || ||||| || | ||| Sbjct 7548 AGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGGCGGA 7489 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||| ||| | | || || || || |||||| Sbjct 7488 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACC 7429 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 |||| ||||| || || ||||| | ||||| || || |||||||| |||| Sbjct 7428 TCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGTGT 7377 >seq608441 Length=509 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || || |||||||| |||| | || |||| || | || || || || || Sbjct 498 TCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCGAAA 439 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||||||| ||||| | |||| |||||| ||||| ||| ||| ||||||| Sbjct 438 ATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTT 379 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | || || ||||| || || | |||||| ||| Sbjct 378 TCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTAACA 319 Query 48756 AAAATCTGCATCGTG 48770 ||||||||||| ||| Sbjct 318 AAAATCTGCATGGTG 304 >seq191525 Length=1060 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 8146 TGTAAAATTTGTTTTGAAAATAATCGTAACGTGTGCTTTGTTCCGTGCGGACATGTGGTG 8205 |||||||| |||| | | | |||||||||||||| || |||||||| || |||||| Sbjct 135 TGTAAAATATGTTATTCCGAGGAACGTAACGTGTGCTTCGTGCCGTGCGGCCACGTGGTG 194 Query 8206 GCATGCGCCAAGTGCGCTTTAACCACGAACACGTGCCCAATGTGT 8250 || |||||||||||||| | ||||| ||| ||| || |||||| Sbjct 195 GCGTGCGCCAAGTGCGCGCTGTCCACGGACAAGTGTCCGATGTGT 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377813482291899