Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq51755 217 1e-51 seq608441 82.4 6e-11 >seq51755 Length=2487 Score = 217 bits (240), Expect = 1e-51 Identities = 638/971 (66%), Gaps = 19/971 (2%) Strand=Plus/Minus Query 106036 TAATCTACGACGCCGTCCTCCCAAGTGCCCGACACGGGCCCGTTGCCGATTCCCGAAAAA 106095 ||||| || |||||||||| |||||| ||| || || || || | | ||| | || Sbjct 1946 TAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAAC 1887 Query 106096 TAGTTGTTGCCAGTATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCT 106155 ||| | || | || | || || ||||| || || |||||||| ||||| || Sbjct 1886 GGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACCG 1827 Query 106156 ACGATTATTTTGTTGGGATCGACGTCTTGTTTCAGCA-ACGCATCGACCGCGTAATGTGT 106214 || | | || ||||| || |||| |||||| | | | || || | | || Sbjct 1826 ACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCT-GATACCGAAGTCGGT 1768 Query 106215 TGTGTATTTTTCTTCGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATC 106274 ||||| |||| | | | ||||| || || |||| | || |||| || ||| Sbjct 1767 GGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAG- 1709 Query 106275 TGT-GTTCGACCACGCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATT 106333 ||| ||| ||||| || || || || ||||||||||||| |||||| | |||| || | Sbjct 1708 TGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTACT 1649 Query 106334 TTTGTGCGTCGTTATAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGG 106393 | || || || || ||||| || || || ||||| | || || || || || || Sbjct 1648 TCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGG 1589 Query 106394 TTAATTCGTAGAATTTGCCCGTTTGCAGTT-CTAATTCGTCTAGCATGGCGCGCAACTCT 106452 | | ||||| | | || || | ||| | | || || | ||| || || ||| Sbjct 1588 TCAGCTCGTAAGTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTAATTCT 1530 Query 106453 TGCAACAGCACGACATATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCC 106512 | || ||| || ||| || |||| || | | | || | ||| || || Sbjct 1529 TTCATGAGCTGAACGTATACATCTCCGTC---TTTAGGACCACCGAGGTCAGGGTTAGCG 1473 Query 106513 CCTTTGCCGCCTGGAAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGC 106572 ||||||||||| || || |||||||| |||||||| ||||| || || ||||| ||| Sbjct 1472 CCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTGG 1413 Query 106573 AAAAATTCCTTTACAGAATTTACAAA-----CACGTTTCTTTTTTCAACGTCATGCATAA 106627 | || || || || || || || |||| || |||| | || || | || Sbjct 1412 AGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTT--ATCGG--TGAAGAA 1357 Query 106628 AATAGAAGGGGTCTGATAGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGAT 106687 | ||||||| || | | ||||| || || || || || | | |||||| | || Sbjct 1356 GA-AGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTAT 1298 Query 106688 TTGCCAATTTAGCCGCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGG 106747 | || ||| | ||||| ||| || |||||||| ||||| ||||||||||| | | Sbjct 1297 TCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACG 1238 Query 106748 ACACGCCTTTTTGCGGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAAT 106807 | | || ||||| |||||||| | ||| |||||||||||||| |||||||| || || | Sbjct 1237 ATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGT 1178 Query 106808 CGGCGCGCCCTTTGCATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGG 106867 | | || || ||||||| ||||| | || |||||| || ||| ||| || Sbjct 1177 CTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAAC 1118 Query 106868 CATCGTTTATTCCATCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAAT 106927 || || || |||||||| || || || || || || ||||| | ||||| | | | Sbjct 1117 TGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGT 1058 Query 106928 TGGGCAGCGGGACTTTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAAT 106987 | || | ||||| || ||||| || || | |||||||||||||||||| || | Sbjct 1057 TCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGT 998 Query 106988 ACGCGGCGACA 106998 | ||| | ||| Sbjct 997 AGGCGCCCACA 987 >seq608441 Length=509 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || ||||||||||| || ||| ||| | || Sbjct 308 ATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCT 367 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || ||||||||||| | || |||||| Sbjct 368 GATACCATAGAAAATGTAAAAGCAAAAATTCAA-GACAAAGAGGGCATTCCTCCAGATCA 426 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || || || || |||||| | ||||| | | | ||| ||||||| Sbjct 427 GCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTAT--CCGATTAC 484 Query 28731 AACATTCAAAAAGAATCTACTCTGC 28755 ||||| || |||||||| ||||||| Sbjct 485 AACATCCAGAAAGAATCGACTCTGC 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421916001129027