Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq237220 190 1e-43 >seq237220 Length=3575 Score = 190 bits (210), Expect = 1e-43 Identities = 371/541 (69%), Gaps = 8/541 (1%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| | | ||| || | ||| || ||||||| ||||||||| | || || || | Sbjct 1238 TCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGT 1179 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 | |||||||||||| ||| || || |||| ||||||||| ||||| ||||| | ||||| Sbjct 1178 ACTTCTTCTTTTCCAGTGTTT-TTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCA 1120 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 |||||||||||||| |||||| ||| | || || |||||||| || ||||| Sbjct 1119 TGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTCCTTGATCAACATATCT 1060 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 || || | |||| ||||| |||||||| || | ||| |||| | || ||||| | Sbjct 1059 AGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGACACACCATTTGTTCC 1000 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 || | | ||| | | || ||| ||| |||| | ||| |||||||| || | Sbjct 999 TGCTATATAAGTACCTTTAGCCCTTATACAGTGGACATGGACACCAATTCCACCTGCAGA 940 Query 26221 TTTTGAAATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTT 26279 ||| || || ||||| | || || |||||| |||| |||| |||||||||| ||| Sbjct 939 TTTAGATATCAAAGCACACTGCTTTAA-GGTATCGTAAATCCCTTCTATGCTATCATCTT 881 Query 26280 TCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATG 26339 |||| ||| || |||||| || |||| || | | | ||| | | ||||| | Sbjct 880 TCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGG 821 Query 26340 TCGGTGTAGCATGAGTATAATATCCTTCACTCAAAG--CTGTATAAGTTTCAAGAACTTC 26397 | || | |||||||| ||||| ||| | |||| |||| || | | || | Sbjct 820 TAGGGCTGGCATGAGTGAAATAT--TTCTCAGAAAGTAAATTATATGTATTTATGGCTGC 763 Query 26398 ATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTC 26457 ||| |||| | | | || | |||| | ||| | | |||||| |||||||||||| Sbjct 762 ATCAATATCTTCACCATGAATTCCAATGGACACTCTCATCAACATATGTTGAGGTCGTTC 703 Query 26458 A 26458 | Sbjct 702 A 702 Score = 132 bits (146), Expect = 2e-26 Identities = 331/490 (68%), Gaps = 16/490 (3%) Strand=Plus/Minus Query 24686 GCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAA 24745 |||||||| |||| | ||||||||| || ||||| || | | ||||| |||||| Sbjct 2441 GCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAAAAA 2382 Query 24746 TGCATTGATGTTAGTTTTGC--AATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAG 24803 || || || |||| || | ||| | ||| | | | | | || | |||||| Sbjct 2381 TGAATAGAAGTTAACTTCCCGTAAT-TCGGCTCAG-CAACATGTATATTAAAAGATTGAC 2324 Query 24804 CTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATAT 24863 ||| || |||| | | ||| ||||| | | || | ||||| | || || | Sbjct 2323 TTTGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAAATTT 2264 Query 24864 CGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTG 24923 | || |||| || ||| ||| ||| || || || |||||| | |||||||| | | Sbjct 2263 CCCAAACTGTCTTATATAAGTCTCGTATTTCTGTAGGTATACTTTCGATATTTTGTATAG 2204 Query 24924 ATCCATT-TTCTCTC-AAT-AGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTT 24979 ||||||| || | | ||| ||||| | |||| | | ||| | || | || | Sbjct 2203 ATCCATTATTGTGTATAATGAGATT---TTTCATTTCCTCATCCCATAAATCTGCTTCTG 2147 Query 24980 TCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTT 25039 ||| |||| | || ||| || | ||||| | |||||||||||| ||||| | |||| Sbjct 2146 TCA-GATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTT 2088 Query 25040 ATTGATAAGTTT--GAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAG 25097 |||||| | | |||||||| ||||||||| |||||||||||||||| || || | | Sbjct 2087 --TGATAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTG 2030 Query 25098 TAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCT 25157 | || || || |||||| |||||| || || ||||| | | |||| ||| |||| | Sbjct 2029 TTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCCATGCTTAGCAATGT 1970 Query 25158 CTTGTTTTAA 25167 || |||||| Sbjct 1969 TTTTTTTTAA 1960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 250964786776475