Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq608441 138 2e-27 seq26808 134 3e-26 seq601675 100 6e-16 >seq608441 Length=509 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || ||||| |||||||| ||| | || || | |||||| ||||| || Sbjct 498 TCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCGAAA 439 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || | || ||| ||||| || || || || ||||| ||||| ||||| ||||||||| Sbjct 438 ATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTT 379 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 ||| | ||| || | ||| ||||||| || |||||||||||||| | ||||||| | Sbjct 378 TCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTAACA 319 Query 192526 AATATCTGCAT 192536 || |||||||| Sbjct 318 AAAATCTGCAT 308 >seq26808 Length=8541 Score = 134 bits (148), Expect = 3e-26 Identities = 179/249 (72%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 192301 TTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTA 192360 || ||| |||| |||||||| | || |||||||| | || | ||||| ||||||| Sbjct 7617 TTTATATTACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTA 7558 Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 || || || | || || |||| || ||||||||||| |||||||| | | ||||| Sbjct 7557 TAGTCTGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGG 7498 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 || || || || ||||| || ||||| |||||| ||| ||||| |||| || || Sbjct 7497 TCTGGCGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAA 7438 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 | ||| || || | |||||||| || || || | ||||| | |||||||||||| | Sbjct 7437 GCTTCCACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGTG 7378 Query 192541 TTAGaaaaa 192549 ||| |||| Sbjct 7377 TTACTAAAA 7369 >seq601675 Length=487 Score = 100 bits (110), Expect = 6e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 50115 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCT 50174 ||||||||||||||||| ||| |||||| ||||| || || ||| || |||||| Sbjct 351 GAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCC 292 Query 50175 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 50234 || | |||||||| | |||| |||||||| || ||| |||||| || || Sbjct 291 TCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTTTCATTTACAATGCCGTCG 232 Query 50235 GATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 50294 || || || |||||||| | ||| | || || || ||| | ||| ||||||||| || Sbjct 231 GAAGCCGCAAAGAATGCAAGAACATGCTTGATGAAGTGTCTCTCACTATCTTTTAGGGTT 172 Query 50295 TCCCA 50299 ||||| Sbjct 171 TCCCA 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 975992110937550