Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq26808 143 5e-29 seq608441 131 3e-25 seq601675 100 5e-16 seq287045 95.1 2e-14 >seq26808 Length=8541 Score = 143 bits (158), Expect = 5e-29 Identities = 182/249 (73%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 || ||| |||| |||||||||| || |||||||| | || | ||||| |||||| Sbjct 7617 TTTATATTACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTA 7558 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || ||||| | || || | || || ||||||||||| ||||| || | | |||||| Sbjct 7557 TAGTCTGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGG 7498 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || || || || ||||| || ||||| |||||| ||| ||||| ||||| || || Sbjct 7497 TCTGGCGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAA 7438 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 | ||| || || | |||||||| || || || | ||||| | ||||||||||||| | Sbjct 7437 GCTTCCACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGTG 7378 Query 172074 TTA-TAAAA 172081 ||| ||||| Sbjct 7377 TTACTAAAA 7369 >seq608441 Length=509 Score = 131 bits (144), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| ||||| | ||| |||| || | |||||| ||||| ||||| | || | Sbjct 489 ATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGC 430 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || || ||||| ||||| ||||| ||||||||| ||| ||| Sbjct 429 TGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATGGTA 370 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||||| || |||||||||||||| | ||||||| || |||||| Sbjct 369 TCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTAACAAAAATCTGC 310 Query 172068 AT 172069 || Sbjct 309 AT 308 >seq601675 Length=487 Score = 100 bits (110), Expect = 5e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 ||||||||||||||||| ||| |||||| ||||| || || ||| || ||||| Sbjct 351 GAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCC 292 Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 || | |||||||| | |||| |||||||| || ||| |||||| || || Sbjct 291 TCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTTTCATTTACAATGCCGTCG 232 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 || || || |||||||| | ||||| || || || ||| | ||| ||||||||| || Sbjct 231 GAAGCCGCAAAGAATGCAAGAACATGCTTGATGAAGTGTCTCTCACTATCTTTTAGGGTT 172 Query 39597 TCCCA 39601 ||||| Sbjct 171 TCCCA 167 >seq287045 Length=1818 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 38819 CATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTC 38878 ||||||| ||||||||||||| |||||| || |||||||||||||| || ||||| Sbjct 355 CATCACACCACATTTTTGGTATTCTCCAACTTTCTTCTCGAAAAAGTTTGTCTTACCTTC 296 Query 38879 TAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAAT 38925 | ||||||| ||||||||| || || ||||| || || || |||| Sbjct 295 CAGAGATATTAGATTCATAAAGTCGAAGGGATTCTTTGTGTTGTAAT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897522527735400