Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq672037 105 2e-17 seq72904 104 7e-17 >seq672037 Length=2223 Score = 105 bits (116), Expect = 2e-17 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 || || | ||| || ||||| || |||||| || |||||||| || |||||||||| | Sbjct 598 TTAATGAGACGGCGTTGAATGTATCCAGTTTCAGCAGTTTTTACTGCAGTATCAATTAAA 657 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||| |||||||||||||| || | | ||| || || || ||| | | Sbjct 658 CCTTCACGTCCACCCATAGCATGAAAATAGAATTCTGAAGGAGTCAGACCAGCAAGATAA 717 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| | ||||| ||||| | | || || || ||| || ||||||| || | | Sbjct 718 GAGTTTTCAACAAAACCTCTGGATTCAGGACCATAATCGTCTTTAATAAAGTGGGGTAAG 777 Query 302764 GT-CCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | | |||| | | || | ||||| || ||||| ||||| |||||||| || | || Sbjct 778 GTACGTTTTCT-AAATCCAAAGGGGATTCGTTTTCCTTCAACATTCTGCTGGCCTACACA 836 Query 302823 CGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||| | || |||||||| | || || || |||||||| ||||||| Sbjct 837 AGCAATAACTTGTGAAATATTAATATTTGAACCTTTCGAGCCAGCTACTACCATA 891 >seq72904 Length=2881 Score = 104 bits (114), Expect = 7e-17 Identities = 219/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| |||| |||||||||||||| ||||| || | | || |||| | | | Sbjct 668 CTTTTTCTACCCACAGCATCAATTTCATCAATAAACAGGATGCATGGAGCGTGCTTACGT 727 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || | ||| | ||||| || | ||| | |||| ||||||| |||| |||| ||| Sbjct 728 GCCATAGAAAACATATCTCTGACTCTGGAAGGACCAACACCAACAAACATCTCTAAGAAT 787 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||||| | || || || || | |||||| ||||| ||||| ||| | || || Sbjct 788 TCAGAACCAGAGACAGTTATAAACGGTACATTAGCTTCACCTGCAGTTGCTTTTGCGAGT 847 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | || ||||| || || || || || ||||| | || ||||| | ||| || || Sbjct 848 AAAGTTTTACCAGTACCGGGAGGACCTGTTAATAATGCACCTTTTGGAATTTTAGCTCCC 907 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT-TT 289319 | |||| | || ||| | || | || | |||| |||| || ||| ||| || Sbjct 908 AAATCAATATACTGCTGAGGATTTTTAAGGAAGTTGACAAATTCCATAATTTC-TATCTT 966 Query 289320 TGCCTCATCACATCCTGCTACATC 289343 ||| || ||||| || || ||||| Sbjct 967 TGCTTCTTCACAACCAGCAACATC 990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1459128033417681