Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq237220 320 1e-82 seq51755 205 8e-48 seq608441 131 1e-25 seq26808 118 9e-22 seq255931 95.1 1e-14 seq162377 82.4 7e-11 >seq237220 Length=3575 Score = 320 bits (354), Expect = 1e-82 Identities = 744/1110 (67%), Gaps = 30/1110 (3%) Strand=Plus/Minus Query 138150 AGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACAT 138209 |||||||||||||||||||| ||| |||| || |||||||| |||| || ||||||||| Sbjct 2475 AGATTTATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACAT 2416 Query 138210 TCCCGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAG 138268 || |||||||| |||||||||| | | || | || || ||||| | | ||||| Sbjct 2415 CCCTGTTTTTAAACCCATTTTCC-ATGAATAAAAATGAATAGAAGTTAACTTCCCGTAAT 2357 Query 138269 TCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAA 138328 |||| | || | | ||| ||||| |||||||| ||||| || ||||| || |||||| Sbjct 2356 TCGGCTCAGCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAG 2297 Query 138329 TGGCCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAA 138388 ||||| | ||| |||| | || ||||| || ||||| |||| || || | Sbjct 2296 CAGCCATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTA 2237 Query 138389 TATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTC 138448 | | | ||||| || | |||||||| || || || || ||| ||||| Sbjct 2236 TTTCTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTT 2177 Query 138449 TCATGTCATCGTTGTACAGATTCAACTTGA-TCAAGTCGTTTATCAGATATCTGTTTATG 138507 |||| || || | | | || | ||| ||| || | || || |||| Sbjct 2176 TCATTTCCTCATCCCATAAAT-CTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACA 2118 Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 || |||||||| || | || || || | ||||| || |||||||| ||||| Sbjct 2117 ACTTGAAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAA 2058 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 ||||| || ||||| | |||||| || || | || || ||||| || | ||||||| Sbjct 2057 GATTCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGA 1998 Query 138628 GAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 ||||| || | || || ||| || || || | || | ||||||||| |||| Sbjct 1997 GAATTGCGAAGGCCATGCTTAGCAATGTTTTTT--TTTAAAGAAGTCCAGTCCCATAAAT 1940 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 | | || ||||| |||||||| ||||||||||| || || | |||||| || || |||| Sbjct 1939 CTGTTGGATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTT 1880 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 |||| | ||||| || ||| ||| || || || || || || || | || |||| Sbjct 1879 CGTATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCAT 1820 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAG--CAATCGGGCCTCGGCGCTCTCGTACGG 138863 ||||||||||||| || || ||||| || ||| || || | || ||||| || Sbjct 1819 AGTAAATAGTTTCAAATATTTGTTGATTTAGTTTAAT--AGCTTCTGGACTTTCGTAAGG 1762 Query 138864 CATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATG 138923 | || | | | || || || || || ||||| || || | ||| | ||| ||||| Sbjct 1761 TAAACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATG 1702 Query 138924 GCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTT 138983 | | ||| || |||||| | | ||||||||| ||||| || |||||||| || Sbjct 1701 CCTAAAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATT 1642 Query 138984 TAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCC 139043 |||||| || ||||| | |||||| |||||| ||||| Sbjct 1641 CAAATTTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGT------ 1588 Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103 |||| | | | ||||| | || | ||| || |||| |||||| || || Sbjct 1587 TTTGTTAT------CATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGC 1534 Query 139104 CACTTCGTCGGGGTC-GCTGT--ATTCGACAATTTCGGCACACAAATTACTACACTTGAT 139160 |||||| || || | ||| |||| || ||||| | |||| |||||||| || || Sbjct 1533 CACTTCATC---ATCAGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAAT 1477 Query 139161 CGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGG 139220 ||||||||||||| ||||| ||||||| ||||| | |||||| | | ||| || || Sbjct 1476 GGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGG 1417 Query 139221 TGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 || ||||| || ||||| | ||||| || Sbjct 1416 AGTACCAGTCTCTACTTGAGCTTCTATTAT 1387 >seq51755 Length=2487 Score = 205 bits (226), Expect = 8e-48 Identities = 338/488 (69%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 56683 GGATTGGCGCCTTTGCCACCCGGAAACTCCCAGTCGATGTCGACTCCATCGAAGAATTTC 56742 || || ||||||||||| || || |||||||| || || ||||| ||||||||||| ||| Sbjct 1481 GGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTC 1422 Query 56743 CACGTTAGTAGAAACTCACGAACGGAATCGATGAATATTTGACGTTTCGTGTTGTCGTGT 56802 || ||| | || || || ||||| | | ||| | ||| || || || ||| Sbjct 1421 CAGGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCGGTG 1362 Query 56803 AAAAAGTAAAACGGATCCGAGAGTGTCCAACCGCCTATCGACGGGAGCACTTTCAGATGC 56862 || ||| | || ||||| | | |||||| || || ||||| || | | || | | Sbjct 1361 AAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCA 1302 Query 56863 GGGTTCGCCTTTTTGATAGCCATTATCTGCCCGAAATTGCCCTTGTACGGTTCGTTCCAA 56922 | ||||| | ||| | ||| | ||||||||| || || ||||| || |||||||| Sbjct 1301 GTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAG 1242 Query 56923 GCGGACACTCCTTTTTGTGGTTTCTGTAGTGCGGCCCACGGATCGTGTATGGACACCTTG 56982 | || | ||| ||||| || ||||| || || ||||| |||||||| || || |||||| Sbjct 1241 GACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTG 1182 Query 56983 AAATCAGCACGATTCGAACACGAGCGTTGCAACGCTTCGAAACTACCCGTGATCGTTTTG 57042 || || |||| || || || ||||| |||| ||||| || || ||| Sbjct 1181 AAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTC 1122 Query 57043 AGACTATCGTTGATGCCGTCGCCGCCACAGATCGGTATGAAACCGTATAAGAGATGCGAC 57102 | ||| || |||||||| || || ||||| ||||| ||||| ||||| | | ||| | | Sbjct 1121 AAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTC 1062 Query 57103 AGATTGGGCACTGGCACCTTGTCGGCTGCAAAATTCCTACCGTATACGCCCCATTCGACG 57162 || || || || || | ||| | | || || ||| || ||||||||||||||| Sbjct 1061 AGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACG 1002 Query 57163 AAATATGC 57170 || || || Sbjct 1001 AAGTAGGC 994 >seq608441 Length=509 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| ||| ||||||| || || |||||||| || || | ||||| |||||| Sbjct 305 ACCATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCC 364 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || |||||| |||||| ||| || ||||||||||| || || ||||| ||| Sbjct 365 TCTGATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGAT 424 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTA 24879 || || || |||| || || |||||||| || || || || ||| | || ||||| Sbjct 425 CAGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGA-CGGACGTACATTATCCGATTA 483 Query 24880 TAACATTCAAAAGGAATCGACACT 24903 ||||| || || |||||||| || Sbjct 484 CAACATCCAGAAAGAATCGACTCT 507 >seq26808 Length=8541 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | ||||| || || || || || ||||| | || || ||||| Sbjct 7379 ACAATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCT 7438 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | |||| || ||| || || |||||||| ||||| || || || || Sbjct 7439 TCCGACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCCAGAC 7498 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||||||| | ||||||||||| ||||| | || ||| | | | ||||| ||| Sbjct 7499 CAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGACTAT 7558 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| ||||| || || || ||| || | | ||||| Sbjct 7559 AATATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGG 7608 >seq255931 Length=537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 302/461 (66%), Gaps = 13/461 (3%) Strand=Plus/Minus Query 56457 GTTGGACCAAGCGCCTTTGAAATCGTAATTCATCAAAAATATTTTGTCAAGATACGTTTG 56516 ||| ||||| || || ||||| |||||| |||| | || || | ||| | ||| | || Sbjct 455 GTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCATGTACTTCTG 396 Query 56517 CGCCTCGTCGTAATCGACGACGGCTATCTTATCGTATCCCGCGCTTATCGCGCTCGTGAG 56576 || || | ||| | || || ||||| || | || ||||| || || || || Sbjct 395 GGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAG 336 Query 56577 TTGGAATTTACGACCCGTTTCGATCTCCAACTGGTCGAGCATATGTCTCAACTCCTTCAA 56636 | | | | | ||| || || | ||| || || | ||| || | || ||||||| Sbjct 335 CTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCAT 276 Query 56637 CAGAATCAC--ATAAGTCGACCCGTCGTGTGCTGGATCACCTAA--CAGGGGATTGGCGC 56692 || || ||| || ||||| | | || |||| | ||||| || |||| Sbjct 275 GAGCTGAACGTATACATCT--CCGTCTTTAG---GACCACCGAGGTCAGGG--TTAGCGC 223 Query 56693 CTTTGCCACCCGGAAACTCCCAGTCGATGTCGACTCCATCGAAGAATTTCCACGTTAGTA 56752 ||||||| || || ||||||||||| || ||||| ||||||||||| ||||| ||| | | Sbjct 222 CTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAGGTTTGGA 163 Query 56753 GAAACTCACGAACGGAATCGATGAATATTTGACGTTTCGTGTTGTCGTGTAAAAAGTAAA 56812 | || || ||||| | | ||| | ||| || || || ||| || ||| | | Sbjct 162 GGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCGGTGAAGAAGAAGA 103 Query 56813 ACGGATCCGAGAGTGTCCAACCGCCTATCGACGG-GAGCACTTTCAGATGCGGGTTCGCC 56871 | ||||| | | |||||| || || ||||| || || |||| || | ||||| Sbjct 102 AGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAG-CCAGTATTCGCT 44 Query 56872 TTTTTGATAGCCATTATCTGCCCGAAATTGCCCTTGTACGG 56912 | ||| | ||| | ||||||||| || || ||||| || Sbjct 43 TGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGG 3 >seq162377 Length=1555 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||| || || || || | ||||||||||| || Sbjct 120 ATGCAGATCTTCGTGAAAACTCTGACCGGGAAGACCATCACATTGGAAGTAGAAGCATCC 179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGA 24808 |||||| | || | || || ||||||||||||||||||||| Sbjct 180 GACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGA 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446113325703640