Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq51755 196 4e-45 seq434692 174 1e-38 seq462883 93.3 3e-14 seq617918 84.2 2e-11 >seq51755 Length=2487 Score = 196 bits (216), Expect = 4e-45 Identities = 583/887 (66%), Gaps = 33/887 (4%) Strand=Plus/Plus Query 28809 GCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTG 28868 || || || || |||||| ||||||| | || || | |||||| | ||| | Sbjct 994 GCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGACCGCATCCCGGTT 1053 Query 28869 CCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAAC 28928 || ||||| | ||| || | ||||||||| | || ||||| || || || || |||| Sbjct 1054 CCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGTGATGGCATCAAT 1113 Query 28929 GACGCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGT 28988 ||| | ||| || || |||||| |||| |||| ||||| |||| ||||||| Sbjct 1114 GACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCATGCAGCGGCCGT 1173 Query 28989 TCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGC 29048 ||| || || ||| |||| |||||||| ||||| || | || || || |||||||| Sbjct 1174 GAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAGCCTCAAAAGGGA 1233 Query 29049 GTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATG--GCTGCCAAGT 29106 | || | |||||||||||||||||||| || ||||| ||||| ||| | || || Sbjct 1234 TTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTG--AAAC 1291 Query 29107 TGGCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGACCCTT 29166 || ||| | | || || |||| || || || |||||||||||| |||| || | Sbjct 1292 AAGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCT 1351 Query 29167 TTTATTTTATGCACGACGCGGAGAAACGGCGCGTG-----TTTGTGGACTCGGTCGAGGA 29221 | | | || | ||| || |||| ||||| || || | ||| || | || Sbjct 1352 TCT-TCTTCTTCAC----CGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCGTGAAAGA 1406 Query 29222 ATTTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGG 29281 || | || ||||| || || || || || || ||||| ||||| || || ||||| Sbjct 1407 CTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCCTGGCGG 1466 Query 29282 TAAAGGCGCTAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT- 29339 |||||||||||||| ||| || | | || | | | || | |||| || || Sbjct 1467 CAAAGGCGCTAACCCTGAC-CTCG-----GTGGTCCTAAAGACGGAGATGTAT-ACGTTC 1519 Query 29340 --TTACTGAAGGAATTGCGCGCAATGCTGGATAAACT-GCAATTGCAAACGGGTAAAACG 29396 | |||| ||||| || |||| ||||| | || || || | || |||| ||| Sbjct 1520 AGCTCATGAAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTG-AGACTGGTAGAACT 1578 Query 29397 TATGAATTGACAAGCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGAC 29456 || || |||| || ||||| | || ||||| || || ||||| ||| | Sbjct 1579 TACGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTACAAG 1638 Query 29457 GTTGTGCAAAAATTTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGG 29516 | | || || | | ||| | || || | ||||||||||| || || || || ||| Sbjct 1639 GAAGCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGG 1698 Query 29517 TCAAACACCGATTTGGGATATCAAACTACACTCTACGCACCGAGTTGGAATCCCAACGAG 29576 || ||| | | | ||| |||| || | || ||||| ||| ||||| ||| || || Sbjct 1699 TCTAACGACACTCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCAAAGGAA 1758 Query 29577 CTTTACAACACTGACCACGCCGTAAAGTCGCTCACTAACCAAGGCGTGGACCCGCGCAAA 29636 ||||| ||| ||| || | | || || | |||||| || |||| |||| Sbjct 1759 ACTTACACCACCGACTTCGGTATCAGGTATCTGCTGACCCAAGGTGT---TCCGCCCAAA 1815 Query 29637 A---TTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACGGGCGT 29680 | | |||| || || || |||||||| || || ||||| || || Sbjct 1816 AAGCTGGTTGTCGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGT 1862 >seq434692 Length=272 Score = 174 bits (192), Expect = 1e-38 Identities = 134/159 (84%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 34490 TGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 |||| || || || ||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 267 TGGCGGGGCGGCCCAGCGCCTTGGCGACGTCGGGCATGTTGACGATGACGGTCTTGATGC 208 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||| ||||| || |||||||||||||| || |||||||| ||||||||||||||||| | Sbjct 207 CGTTCCCCTTCCCCTCGACCTTGGCGCATATCCGCGGCATCTTGTAGCGGTAGAACGCAT 148 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGG 34648 | | || |||||||| ||||| | | |||||| ||| Sbjct 147 CGGAGACGTTGCGGTTCACGTTTAAGGAACCCATCCTGG 109 >seq462883 Length=292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 103724 CCCGAGATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAAGTCAAATGC 103783 |||||| | | || || || || || || || || ||| || | |||||| |||||| Sbjct 113 CCCGAGGAATTGGCGGAGGCCGGATTTTTCTATACAGGCCAAGGTGACAAAACTAAATGC 172 Query 103784 TTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGGCAACAACAC 103843 || || || |||| || || || ||||||| ||||||| |||||| |||| ||| Sbjct 173 TTCTATTGTGACGGAGGGCTAAAAGATTGGGAAAGTGATGACGTTCCGTGGGAACAGCAC 232 Query 103844 GCGCTTTGGTTCGGACGCTGCGCATACGTGCTACTTGTCAAAGG 103887 || ||||||| || ||||||||||||| ||| || ||||| Sbjct 233 GCTAGATGGTTCGACCGTTGCGCATACGTGCAACTGGTGAAAGG 276 >seq617918 Length=543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 103295 TTTTTGGAGCCGCAACGAATGGCCGCCAACGGGTTCTACTATTTGGGCCGCAGCGACGAG 103354 |||||| ||| | | | ||||| |||||| |||||||| | || ||| |||||||| Sbjct 318 TTTTTGACACCGGAGCAATTGGCCCGCAACGGATTCTACTACCTCGGTCGCGGCGACGAG 377 Query 103355 GTGCGCTGCGCGTTTTGCAAAGTGGAAATCATGCGCTGGATGAATGGCGACGACCCGGAG 103414 || |||| || || || || || ||||||||| | ||| | | ||||||||||| | Sbjct 378 GTTTGCTGTGCTTTCTGTAAGGTAGAAATCATGAGGTGGGTCGAGGGCGACGACCCTGCT 437 Query 103415 AGCGACCATAAAAAGTGGGCGCCTCGATGCCCGTTT 103450 ||||||| | |||||| || | || || ||| Sbjct 438 GCCGACCATCGGAGGTGGGCCCCCCAGTGTCCCTTT 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409455833530109