Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq51755 176 3e-39 seq255931 109 4e-19 >seq51755 Length=2487 Score = 176 bits (194), Expect = 3e-39 Identities = 630/976 (65%), Gaps = 17/976 (2%) Strand=Plus/Minus Query 5560 CTGTAATCCACCACACCGTCTTCCCAAGTGCCTGCAATCTTGTCGGTCGCCACACCGGTG 5619 || ||||||||||| ||||| | |||||| || || | | | || || |||||| Sbjct 1949 CTATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTG 1890 Query 5620 AATACATTGTTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTACATGGCTACT 5679 || ||| || | ||| || ||||| | ||| ||||| |||||||| || || Sbjct 1889 AACGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACA 1830 Query 5680 CCCACAATTAGCTTCCTCGACTCGACGCTCTGATTTAGCAGACGCCTGACGGAAAAATCG 5739 || |||| ||||| | | | || | || | |||||| ||||| || ||| Sbjct 1829 CCGACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCGAAGTCG 1770 Query 5740 GTCGTGTACGTTTCGCCTGGGTTCCACGATGGAGCGAACAGAGGTGTCTGGTGTCCCAGA 5799 || ||||| ||||| ||| |||| || |||||| | |||| ||||| ||||| ||| Sbjct 1769 GTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGA 1710 Query 5800 TC--CGTCAACGACCAGGCACCCTTGTAATCGTACGTCATGACAAATATGTGATCAAGGT 5857 ||| | ||||||||||||||| | ||||| ||||||| || || ||||| | || Sbjct 1709 GTGTCGTTA--GACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGT 1652 Query 5858 ATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGCGCCGACGGCGC 5917 | || || || ||||| || || | ||||||||| || || | || ||| Sbjct 1651 ACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAG 1592 Query 5918 TCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAACTCATCAAGCATCACGCGAAGT 5976 |||| || ||| |||||| || | ||| |||||| | ||| || | | Sbjct 1591 AGGTCAGCTCGTA-AGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAAT 1533 Query 5977 TCCCGCAGCAAAAGAG-TGTAGGTGTTGCGATCC-ACCTCGGCATTACCCAACACAGAAT 6034 || | | ||| || | || | ||| | | | | ||| | ||| | Sbjct 1532 TCTTTC-----ATGAGCTGAACGTATACATCTCCGTCTTTAGGACCACCGAGGTCAGGGT 1478 Query 6035 TGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTTCCAGG 6094 | || || || || || || |||||||| || || || || || || ||||||||||||| Sbjct 1477 TAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGG 1418 Query 6095 TCTCCAGAAACTCGCGGACGCTTGTGACGAACACCTCACGCTTAGAGTCATCGTTCATGA 6154 | | || || || ||| ||||| |||||||| | | |||| | | || Sbjct 1417 TTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCGGTGAAGA 1358 Query 6155 AATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAACGAGGGGT 6214 | | || |||||| ||| ||||| || || || || |||| || | | || | | Sbjct 1357 AGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTAT 1298 Query 6215 TGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTGTACGCCT 6274 | |||| | ||||||||| || |||||||| ||||| ||||| | | | Sbjct 1297 TCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACG 1238 Query 6275 CAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACCTTGAAGT 6334 | || || || || || |||| || |||||| ||||| ||| |||||||||| Sbjct 1237 ATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGT 1178 Query 6335 CATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAA--GGAATTGGGAATCTGCTTGAG 6392 | || || || ||| || ||| | || | ||| | || ||| | || | Sbjct 1177 CTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTT--CAATTTCTTTCAA 1120 Query 6393 GGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAG 6452 ||| || ||||| |||||||||||| || ||||| ||||| |||| || ||||| Sbjct 1119 ACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAG 1060 Query 6453 ATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAA 6512 || || | || | ||| | ||| |||| ||| |||||| ||||| || ||||| Sbjct 1059 GTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAA 1000 Query 6513 ATACGCACCGACGACT 6528 || || || || ||| Sbjct 999 GTAGGCGCCCACAACT 984 >seq255931 Length=537 Score = 109 bits (120), Expect = 4e-19 Identities = 346/529 (65%), Gaps = 13/529 (2%) Strand=Plus/Minus Query 5734 AAATCGGTCGTGTACGTTTCGCCTGGGTTCCACGATGGAGCGAACAGAGGTGTCTGGTGT 5793 || ||||| ||||| ||||| ||| |||| || |||||| |||||| ||||||||| Sbjct 526 AAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGT 467 Query 5794 CCCAGA--TCCGTCAACGACCAGGCACCCTTGTAATCGTACGTCATGACAAATATGTGAT 5851 || ||| ||| | ||||||||||||||| | ||||| ||||||| || || || | Sbjct 466 CCGAGAGTGTCGTTA--GACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGT 409 Query 5852 CAAGGTATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGCGCCGA 5911 | | ||| || || || ||||| || || | ||||||||| || |||| || Sbjct 408 CCATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGA 349 Query 5912 CGGCGCTCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAACTCATCAAGCATCACG 5970 ||| |||| || ||| |||||| || | ||| |||||| | ||| Sbjct 348 TGGCAGAGGTCAGCTCGTA-AGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGA 290 Query 5971 CGAAGTTCCCGCAGCAAAAGAG-TGTAGGTGTTGCGATCC-ACCTCGGCATTACCCAACA 6028 || | |||| | | ||| || | || | ||| | | | | ||| | Sbjct 289 CGTAATTCCTTC-----ATGAGCTGAACGTATACATCTCCGTCTTTAGGACCACCGAGGT 235 Query 6029 CAGAATTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACT 6088 ||| || || || || || || || ||||||||||| || || || || || ||||||| Sbjct 234 CAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACT 175 Query 6089 TCCAGGTCTCCAGAAACTCGCGGACGCTTGTGACGAACACCTCACGCTTAGAGTCATCGT 6148 ||||||| | || || || ||| | ||||| |||||||| | | |||| Sbjct 174 TCCAGGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCGG 115 Query 6149 TCATGAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAACG 6208 | | ||| | || |||||| ||| ||||| || || || || |||| || | | || Sbjct 114 TGAAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGC 55 Query 6209 AGGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTA 6257 | || |||| | ||||||||| || |||||||| ||||| Sbjct 54 CAGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323021751923147