Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq51755 241 1e-58 seq462883 145 6e-30 seq255931 129 5e-25 seq617918 113 4e-20 >seq51755 Length=2487 Score = 241 bits (266), Expect = 1e-58 Identities = 648/973 (67%), Gaps = 35/973 (4%) Strand=Plus/Plus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || || || || ||||||||||| ||| | || || || || ||| | ||| | Sbjct 994 GCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGACCGCATCCCGGTT 1053 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 || ||||| | ||| || | ||||| ||||| || ||||| || || || || |||| Sbjct 1054 CCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGTGATGGCATCAAT 1113 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | ||| ||| ||||||||| | || |||| || || |||| |||||| Sbjct 1114 GACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCATGCAGCGGCCGT 1173 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 ||| ||||| || |||| |||||||| ||||| || | || || || |||||||| Sbjct 1174 GAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAGCCTCAAAAGGGA 1233 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 | || | |||||||||||||||||||| |||||||| ||||| ||| | || | Sbjct 1234 TTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAA 1293 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432 || ||| | | || || | || || || || |||||||||||| |||| || ||| Sbjct 1294 GCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTC 1353 Query 29433 TATTTCATGCACGACGCGGAAAAAC--GGCGTG--TGTTT-GTGGACTCGGTCAGAGAAT 29487 | ||| | ||| || ||||| ||||| |||| || | ||| || | ||| | Sbjct 1354 TTCTTC-TTCAC----CGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCGTGAAAGACT 1408 Query 29488 TTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCA 29547 | || || |||||||| || || || || || || || |||||||| || || |||| Sbjct 1409 TCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCCTGGCGGCA 1468 Query 29548 AAGGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT--- 29603 ||||||| ||||| ||| || | | || | | | || | |||| || || Sbjct 1469 AAGGCGCTAACCCTGAC-CTCG-----GTGGTCCTAAAGACGGAGATGTAT-ACGTTCAG 1521 Query 29604 TTACTAAAGGAATTGCGCGCAATGATGGACGAG-TTACAATTGCAAACGGGCAAAACGTA 29662 | | || ||||| || |||| |||| ||| | | || | || || | ||| || Sbjct 1522 CTCATGAAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTG-AGACTGGTAGAACTTA 1580 Query 29663 CGAGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGC 29722 |||| |||| || |||||| |||| |||||||| || || || ||| | | Sbjct 1581 CGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGA 1640 Query 29723 TGCGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTC 29782 || || |||| | ||| | || ||| ||||||| ||||| || || || || ||||| Sbjct 1641 AGCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTC 1700 Query 29783 AAACACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACT 29842 ||| | | | || | || || |||| ||||| ||| ||||| ||||| ||| Sbjct 1701 TAACGACACTCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCAAAGGAAAC 1760 Query 29843 GTACAACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAA- 29901 |||| ||| ||| || | | || || || ||| || || |||| ||||| Sbjct 1761 TTACACCACCGACTTCGGTATCAGGTATCTGCTGACCCAAGGTGT---TCCGCCCAAAAA 1817 Query 29902 --TTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGG 29959 | |||| || || || |||||||| || || |||||||| || || | | || Sbjct 1818 GCTGGTTGTCGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGT-TC--ATGACTACAA 1874 Query 29960 TGACAAC-TA--TTTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGG 30016 |||| || || || || || |||| ||| || || | || |||||| | ||||| Sbjct 1875 TGACGACATACCGTTCACCGGAGTAGCTAATGGCCCAGTTAAGGGAACTTGGCAGGACGG 1934 Query 30017 CGTTGTCGACTAT 30029 ||| || || ||| Sbjct 1935 CGTGGTGGATTAT 1947 >seq462883 Length=292 Score = 145 bits (160), Expect = 6e-30 Identities = 185/255 (73%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 103795 GCGCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTT 103854 ||||||||| ||||| | |||| | |||| | | |||||||| | || | || || Sbjct 22 GCGCATGCCGGGCCCTGTGCACTCGCGGTACTCGACCGAGGCCGCGCGGCTCGCCACCTT 81 Query 103855 TAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTA 103914 ||||| ||||| | || || |||||||| ||| | |||| || |||||||| | Sbjct 82 CAAGGACTGGCCGAGATGTATGCGCCAGAAACCCGAGGAATTGGCGGAGGCCGGATTTTT 141 Query 103915 CTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTG 103974 ||| || ||||| | ||||| || ||||||||||| || ||||| || ||||| ||||| Sbjct 142 CTATACAGGCCAAGGTGACAAAACTAAATGCTTCTATTGTGACGGAGGGCTAAAAGATTG 201 Query 103975 GGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGT 104034 ||| ||||| | |||||| |||| ||||| | || ||||||||||||||| Sbjct 202 GGAAAGTGATGACGTTCCGTGGGAACAGCACGCTAGATGGTTCGACCGTTGCGCATACGT 261 Query 104035 GCTACTTGTCAAGGG 104049 || ||| || || || Sbjct 262 GCAACTGGTGAAAGG 276 >seq255931 Length=537 Score = 129 bits (142), Expect = 5e-25 Identities = 358/537 (67%), Gaps = 23/537 (4%) Strand=Plus/Plus Query 29329 AGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTGGCCAATCCGCACCTCA 29388 ||||||||||||| |||||||| ||||| ||| | || | || ||| | | | | Sbjct 1 AGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAAGCGAATACTGGCTTAA 60 Query 29389 AAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTCTATTTCATGCACGACG 29448 | || | || || || || |||||||||||| |||| || |||| ||| | ||| Sbjct 61 AGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCTTCTTCTT-CAC---- 115 Query 29449 CGGAAAAACG--GCGTGT--GTTT-GTGGACTCGGTCAGAGAATTTCTGCAGGTGTGGAA 29503 || ||||| ||||| |||| || | ||| || | ||| || || || ||||| Sbjct 116 CGATAAAACCAAGCGTGATCGTTTCGTTGCCTCCGTGAAAGACTTCCTCCAAACCTGGAA 175 Query 29504 GTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGGCGCCAACCC-GA 29562 ||| || || || || || || ||||||||||| || || ||||||||||| ||||| || Sbjct 176 GTTCTTCGATGGTGTCGATATTGACTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCCTGA 235 Query 29563 CACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT---TTACTAAAGGAATTGC 29619 | || | | || | | | || | |||| || || | | |||||||| | Sbjct 236 C-CTCG-----GTGGTCCTAAAGACGGAGATGTAT-ACGTTCAGCTCATGAAGGAATTAC 288 Query 29620 GCGCAATGATGGACGAG-TTACAATTGCAAACGGGCAAAACGTACGAGTTGACAAGCGCA 29678 | |||| |||| ||| | | || | || || | ||| |||||| |||| || Sbjct 289 GTCAAATGTTGGATGAGCTGGCGGCTG-AGACTGGTAGAACTTACGAGCTGACCTCTGCC 347 Query 29679 ATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGCAAAAGTTTCTC 29738 ||||| |||| |||||||| || || || ||| | | || || |||| | Sbjct 348 ATCAGCGCCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGAAGCCCAGAAGTACATG 407 Query 29739 GATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACCGATTTGGGC 29798 || | || ||| ||||||| ||||| || || || || ||||| ||| | | | || Sbjct 408 GACCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTCTAACGACACTCTCGGA 467 Query 29799 TACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTGTACAACACGGAC 29855 |||| || |||| ||||| ||| ||||| ||||| ||| |||| ||| ||| Sbjct 468 CACCAGACCGCTCTGTACGCTCCGTCTTGGAGTCCAAAGGAAACTTACACCACCGAC 524 >seq617918 Length=543 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 103541 TTCTTGGAACCGCAACGACTGGCCGCCAACGGGTTCTTCTACTTGGGCCGCGGCGACGAA 103600 || ||| |||| | | | ||||| |||||| |||| |||| | || ||||||||||| Sbjct 318 TTTTTGACACCGGAGCAATTGGCCCGCAACGGATTCTACTACCTCGGTCGCGGCGACGAG 377 Query 103601 GTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAGGGCGACGACCCGGCT 103660 || |||| || || || || || || || ||| | |||| |||||||||||||| ||| Sbjct 378 GTTTGCTGTGCTTTCTGTAAGGTAGAAATCATGAGGTGGGTCGAGGGCGACGACCCTGCT 437 Query 103661 CGCGATCATCAGAGGTGGGCGCCGCAGTGTCCGTT 103695 ||| |||| ||||||||| || |||||||| || Sbjct 438 GCCGACCATCGGAGGTGGGCCCCCCAGTGTCCCTT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395605560631057