Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq28584 107 2e-18 seq672037 89.7 6e-13 >seq28584 Length=21043 Score = 107 bits (118), Expect = 2e-18 Identities = 175/246 (71%), Gaps = 17/246 (7%) Strand=Plus/Plus Query 192880 CTATGGTTAAACAAGCCATTGGA-TTTATTCCGTGTCACAACTTAAAA-------ACGGA 192931 |||||| |||||||||||| ||| ||||| |||||| || | | ||| Sbjct 16903 CTATGGGTAAACAAGCCATGGGAGTTTATA-----TCACAAATTTCCATGTTAGGATGGA 16957 Query 192932 AACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCA 192989 ||| | ||||| || ||||||| || ||||| || ||||| ||| ||| | || | Sbjct 16958 TACACTGGCTCATGTTTTGTATTATCCTCATAAACCTCTAGTTACAACAAGATCTATGGA 17017 Query 192990 AAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGC 193049 | | ||| ||||| ||| ||| || ||||| ||||||||||||| ||| Sbjct 17018 ATACTTACGTT-TTAGAGAATTG-CCAGCAGGAATTAACTCTATTGTTGCTATTCTTTGT 17075 Query 193050 TATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGA 193109 |||||||||||||| |||||||||||| ||||||| ||| | || || | || |||||| Sbjct 17076 TATACTGGTTATAACCAAGAAGACAGTGTTATTTTGAATGCATCTGCTGTAGAGAGAGGA 17135 Query 193110 TTATTT 193115 || ||| Sbjct 17136 TTTTTT 17141 >seq672037 Length=2223 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915 ||||||| | | |||| |||| ||| |||| ||| | |||||||| ||||| ||| Sbjct 1855 AAAGACATCTAAGAGATGATGATCTTGTGATATTTAATCGTCAACCAACTCTTCACAAAA 1796 Query 51916 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGG 51975 |||| | || |||||| | | || ||||||| |||||| || Sbjct 1795 TGAGTATGATGGGCCATAGAGTTAAGGTACTTCCTTGGTCAACATTTCGTATGAATCTGA 1736 Query 51976 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 52035 | || | |||| ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1735 GTTGCACATCACCATACAATGCTGATTTTGATGGTGATGAAATGAATTTGCATGTTCCTC 1676 Query 52036 AATCATATGGA 52046 ||||| ||||| Sbjct 1675 AATCA-ATGGA 1666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629834859195640